| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,797,374 – 17,797,484 |
| Length | 110 |
| Max. P | 0.567782 |
| Location | 17,797,374 – 17,797,484 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.51 |
| Shannon entropy | 0.50408 |
| G+C content | 0.35713 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -10.58 |
| Energy contribution | -11.34 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17797374 110 + 22422827 AGAACUCAAAACACUUUCA---UGCACGUUUCGAGUUUUUAGCUGUUU-GUCUAUUUGUUUAAUUGCCGGCAAUGGUGACGUAAACAUAAUUAUAAACAGAUUAU-AUCAGAGCA (((((((.((((.......---.....)))).)))))))...((((((-((.....((((((.(..(((....)))..)..)))))).....)))))))).....-......... ( -23.70, z-score = -1.40, R) >droEre2.scaffold_4690 8123597 110 + 18748788 AGAACCCAAAACACUUGCU---CAUACGGUUCGAGUUUUCAGCUGUUU-AUCUAUUUGUUUAAUUGUCAGCAAUGGUGACGUAAGCAAAUUUAUAAACAGAUUAG-AUCAGAGCA ...................---......((((..((((....((((((-((..(((((((((.(..(((....)))..)..)))))))))..))))))))...))-))..)))). ( -27.60, z-score = -2.63, R) >droYak2.chrX 16415832 114 + 21770863 AGAACCCAAAACAUCUGUUUAUCAUACGGUUUGGGGUUUCAGCUGUUUUGUCUAUUUGUUUAUUUGCCAGCAAUGGUGACGUAAACAUAAUUAUAAACAGAUUAG-AUCAGAGCA .((((((.((((...((.....))....)))).)))))).....((((((((((((((((((((..(((....)))..).............))))))))).)))-).)))))). ( -30.31, z-score = -2.70, R) >droSec1.super_8 97707 110 + 3762037 AGAACUCAAAACACUUGCA---CGCACGUUUUGAGUUUUCAGCUGUUU-GUCUAUUUGUUUAAUUGCCAGCCAUGGUGACGUAAACAUAAUUAUAAACAGAUUAG-AUCAGAGCA ((((((((((((...((..---..)).))))))))))))...((((((-((.....((((((.(..(((....)))..)..)))))).....)))))))).....-......... ( -29.40, z-score = -2.74, R) >droSim1.chrX 13847828 110 + 17042790 AGAACUCAAAACACUUGCA---CGCACGUUUUGAGUUUUCAGCUGUUU-GUCUAUUUGUUUAAUUGCCAGCCAUGGUGACGUAAACAUAAUUAUAAACAGAUUAG-AUCAGAGCA ((((((((((((...((..---..)).))))))))))))...((((((-((.....((((((.(..(((....)))..)..)))))).....)))))))).....-......... ( -29.40, z-score = -2.74, R) >droGri2.scaffold_15245 7741804 99 - 18325388 ------------AGUUGACCAAUAAUGACUUGGGGAUUUGUGACCUGUGGCCCAAAUG---AAGCACUUGUCGUA-UCAGGUAAGCGUAUUUAUAAACAAAAGAUUACAAAAGUA ------------......((((.......))))...(((((((.((.........(((---((((.(((..(...-...)..))).)).))))).......)).))))))).... ( -14.19, z-score = 1.77, R) >consensus AGAACUCAAAACACUUGCA___CACACGUUUUGAGUUUUCAGCUGUUU_GUCUAUUUGUUUAAUUGCCAGCAAUGGUGACGUAAACAUAAUUAUAAACAGAUUAG_AUCAGAGCA ...........................((((.((........((((((........((((((...((((....))))....)))))).......)))))).......)).)))). (-10.58 = -11.34 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:25 2011