| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,775,489 – 17,775,627 |
| Length | 138 |
| Max. P | 0.812701 |
| Location | 17,775,489 – 17,775,627 |
|---|---|
| Length | 138 |
| Sequences | 6 |
| Columns | 142 |
| Reading direction | reverse |
| Mean pairwise identity | 68.16 |
| Shannon entropy | 0.60427 |
| G+C content | 0.50818 |
| Mean single sequence MFE | -41.98 |
| Consensus MFE | -17.66 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17775489 138 - 22422827 UCUAUCGCGCCUCGACUUGAUCUA-CAACGCACUUGCUGCGGGGCGUGCGAGCGGGACGGGAAUAGGGCU---GCGGGGAGUGCAGAGAAAGAAAGCAUAAAUUCUUCGCCUUUCUUUGCACAAUCGCACAAUCUUCCAUUG (((.(((((((((...(((.....-)))((((.....))))))).))))))...)))..((((.(..(.(---((((...((((((((((((...((...........))))))))))))))..))))))..).)))).... ( -45.70, z-score = -0.96, R) >droEre2.scaffold_4690 8112554 119 - 18748788 -----------UCUAUCGCUCCUCUCCACGCACUUGGC-CAGUGGGUGCAAGCGGGACGGGGAUAGGGUU---CCGGGGAGUGCAGAGAAAGAAAGCAUAAAUUCUUCGCCUUUCUUUGCACAAU--------CUUCCAUUG -----------((((((.(((.(((((..((((((...-....))))))..).)))).)))))))))...---..(((((((((((((((((...((...........))))))))))))))..)--------))))..... ( -39.20, z-score = -0.83, R) >droYak2.chrX 16403613 113 - 21770863 --------------------UCUAUCUACGCACUUGGC-CAGUGGGUGCGAGCGGGACGGGGAUUGGGCUCAGGGGGUGAGUGCGGAGAAAGAAAGCAUAAAUUCUUCGCCUUUCUCUGCACAAG--------CUUCCAUUG --------------------(((..((.(((((((...-....)))))))))..)))..(((......))).((((((..((((((((((((...((...........))))))))))))))..)--------))))).... ( -39.90, z-score = -1.04, R) >droSec1.super_8 85974 138 - 3762037 UCUAUCGCUCCUCGCCUCGUUCUA-CAACGCACUUGCUGCGGGGCGUGCGAGCGGGACGGGAAUAGGGCU---GCGGGGAGUGCAGAGAAAGAAAGCAUAAAUUCUUCGCCUUUCUUUGCACAAUCGCACAAUCUUCCAUUG ....(((((((.((((((((....-(((.....)))..)))))))).).))))))....((((.(..(.(---((((...((((((((((((...((...........))))))))))))))..))))))..).)))).... ( -52.30, z-score = -2.55, R) >droSim1.chrX 13836711 138 - 17042790 UCUAUCGCUCCUCGCCUCGUUCUA-CAACGCACUUGCUGCGGGGCGUGCGAGCGGGACGGGAAUAGGGCU---GCGGGGAGUGCAGAGAAAGAAAGCAUAAAUUCUUCGCCUUUCUUUGCACAAUCGCACAAUCUUCCAUUG ....(((((((.((((((((....-(((.....)))..)))))))).).))))))....((((.(..(.(---((((...((((((((((((...((...........))))))))))))))..))))))..).)))).... ( -52.30, z-score = -2.55, R) >droWil1.scaffold_181096 3019922 138 + 12416693 UCUCUCCCUCUCUCAUUUGCUCUA-CUACGCACUUACCCAGGAAGGCAAUAAAGAAAUGAAAACCGAAGCAAAAGAAACAAAAUAAA-AAAGAAAGCAUGAAUUCUUACAGCUACUUUUUUUUUUCCUUUG--CUUCCAUUA ............((((((.((.((-....((.(((.(....))))))..)).)))))))).....((((((((.((((......(((-((((..(((.((........))))).))))))).)))).))))--))))..... ( -22.50, z-score = -1.20, R) >consensus UCUAUCGCUCCUCGACUCGUUCUA_CAACGCACUUGCCGCGGGGCGUGCGAGCGGGACGGGAAUAGGGCU___GCGGGGAGUGCAGAGAAAGAAAGCAUAAAUUCUUCGCCUUUCUUUGCACAAUCGCACA__CUUCCAUUG ...............((((.(((.....(((((............)))))...))).))))...................((((((((((((.(((........)))...)))))))))))).................... (-17.66 = -18.28 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:24 2011