| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,771,154 – 17,771,252 |
| Length | 98 |
| Max. P | 0.741791 |
| Location | 17,771,154 – 17,771,252 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 89.87 |
| Shannon entropy | 0.14158 |
| G+C content | 0.30466 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -17.28 |
| Energy contribution | -17.29 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17771154 98 - 22422827 AAGUUAGUUUUUAUUGCCAU----AUAGAUGGUACUUUGUGCCAAUCGAAAAUUGUAGUGCUAUAUUGUAAAUACGAGGGGACUGACUAUAAAUCAAAUAAA .(((((((((((........----...((((((((...))))).))).....(((((.(((......)))..)))))))))))))))).............. ( -20.80, z-score = -1.52, R) >droSim1.chrX 13832300 102 - 17042790 AAGUUAGUUUUUAUUGCCAUAUAGAUAGAUGGUAUUUUGUGGCAAUCGAAAAUUGUAGUGCUAAAUUGUACAAGCGGGGGGACUGACUAUAAAUCAAAUAAA .((((((((((((((((((((.(((((.....))))))))))))))...........((((......))))......))))))))))).............. ( -25.50, z-score = -2.81, R) >droSec1.super_8 81591 102 - 3762037 AAGUUAGUUUUUAUUGCCAUAUAGAUAGAUGGUAUUUUGUGGCAAUUGAAAAUUGUAGUGCUAAAUUGUGGAAACGAGUUGACUGACUAUAAAUCAAAUAAA .((((((((((.(((((((((.(((((.....)))))))))))))).))................((((....))))...)))))))).............. ( -22.10, z-score = -2.28, R) >consensus AAGUUAGUUUUUAUUGCCAUAUAGAUAGAUGGUAUUUUGUGGCAAUCGAAAAUUGUAGUGCUAAAUUGUAAAAACGAGGGGACUGACUAUAAAUCAAAUAAA .((((((((..((((((((((................)))))))))......((((..(((......)))...)))))..)))))))).............. (-17.28 = -17.29 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:23 2011