Locus 15175

Sequence ID dm3.chrX
Location 17,766,100 – 17,766,208
Length 108
Max. P 0.941981
window20905 window20906

overview

Window 5

Location 17,766,100 – 17,766,208
Length 108
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 94.39
Shannon entropy 0.09801
G+C content 0.54444
Mean single sequence MFE -37.24
Consensus MFE -28.92
Energy contribution -29.16
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.730074
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17766100 108 + 22422827
ACGGUGACGCUGUUGGGGGAA-UUGACCCCACGAACGGGUCAAGGACAAACGUAUCUUUAGCCCAGCUCAACGCCACAAAUAUCCGCUGUCAGCAGAUAGUCAG-ACAGC
..((((..(((..(((((...-....))))).....(((..(((((........)))))..))))))....))))..........((((((.((.....))..)-))))) ( -34.40, z-score =  -1.63, R)
>droEre2.scaffold_4690 8103099 108 + 18748788
-CGGUGGCGAUGUUGGGUGAA-UUGACCCCAACAGCGGGUCAAGGACAAACGUAUCUUUAGCCCAGCUCAACGCCACAAAUAUCCGCUGUCAGCAGAUAGUCAGCGCAGC
-..((((((.(((((((.(..-....))))))))(((((..(((((........)))))..))).))....)))))).......(((((.(........).))))).... ( -40.60, z-score =  -3.13, R)
>droYak2.chrX 16393932 108 + 21770863
-CGGUGGCGGUGCCGGGGGAAAUUGACCCCACGAGCGGGUCAAGGACAAACGUAUCUUUAGCCCAGCUCAACGCCACAAAUAUCCUCUGUCAGCAGAUAGUCAG-ACAGC
-..((((((.....((((........))))..(((((((..(((((........)))))..))).))))..)))))).........(((((.((.....))..)-)))). ( -42.40, z-score =  -3.33, R)
>droSec1.super_8 76591 108 + 3762037
ACGGUGACGCUGUUGGGGGAA-UUGACCCCACGAACGGGUCAAGGACAAACGUAUCUUUAGCCCAGCUCAACGCCACAAAUAUCCGCUGUCAGCAGAUAGUCAG-ACAGC
..((((..(((..(((((...-....))))).....(((..(((((........)))))..))))))....))))..........((((((.((.....))..)-))))) ( -34.40, z-score =  -1.63, R)
>droSim1.chrX 13826690 108 + 17042790
ACGGUGACGCUGUUGGGGGAA-UUGACCCCACGAACGGGUCAAGGACAAACGUAUCUUUAGCCCAGCUCAACGCCACAAAUAUCCGCUGUCAGCAGAUAGUCAG-ACAGC
..((((..(((..(((((...-....))))).....(((..(((((........)))))..))))))....))))..........((((((.((.....))..)-))))) ( -34.40, z-score =  -1.63, R)
>consensus
ACGGUGACGCUGUUGGGGGAA_UUGACCCCACGAACGGGUCAAGGACAAACGUAUCUUUAGCCCAGCUCAACGCCACAAAUAUCCGCUGUCAGCAGAUAGUCAG_ACAGC
..((((.....((((((.......(((((.......)))))(((((........)))))..))))))....))))..........((((((....))))))......... (-28.92 = -29.16 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 17,766,100 – 17,766,208
Length 108
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 94.39
Shannon entropy 0.09801
G+C content 0.54444
Mean single sequence MFE -38.60
Consensus MFE -35.74
Energy contribution -35.90
Covariance contribution 0.16
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.48
SVM RNA-class probability 0.941981
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17766100 108 - 22422827
GCUGU-CUGACUAUCUGCUGACAGCGGAUAUUUGUGGCGUUGAGCUGGGCUAAAGAUACGUUUGUCCUUGACCCGUUCGUGGGGUCAA-UUCCCCCAACAGCGUCACCGU
(((((-(.(.(.....)).))))))........((((((((((((.(((.(((.((((....)))).))).))))))).(((((....-...)))))..))))))))... ( -39.10, z-score =  -2.18, R)
>droEre2.scaffold_4690 8103099 108 - 18748788
GCUGCGCUGACUAUCUGCUGACAGCGGAUAUUUGUGGCGUUGAGCUGGGCUAAAGAUACGUUUGUCCUUGACCCGCUGUUGGGGUCAA-UUCACCCAACAUCGCCACCG-
...........(((((((.....)))))))...((((((...(((.(((.(((.((((....)))).))).))))))((((((.....-....))))))..))))))..- ( -38.20, z-score =  -2.03, R)
>droYak2.chrX 16393932 108 - 21770863
GCUGU-CUGACUAUCUGCUGACAGAGGAUAUUUGUGGCGUUGAGCUGGGCUAAAGAUACGUUUGUCCUUGACCCGCUCGUGGGGUCAAUUUCCCCCGGCACCGCCACCG-
.((((-(.(.(.....)).))))).........((((((..((((.(((.(((.((((....)))).))).)))))))((((((........)))).))..))))))..- ( -37.50, z-score =  -1.48, R)
>droSec1.super_8 76591 108 - 3762037
GCUGU-CUGACUAUCUGCUGACAGCGGAUAUUUGUGGCGUUGAGCUGGGCUAAAGAUACGUUUGUCCUUGACCCGUUCGUGGGGUCAA-UUCCCCCAACAGCGUCACCGU
(((((-(.(.(.....)).))))))........((((((((((((.(((.(((.((((....)))).))).))))))).(((((....-...)))))..))))))))... ( -39.10, z-score =  -2.18, R)
>droSim1.chrX 13826690 108 - 17042790
GCUGU-CUGACUAUCUGCUGACAGCGGAUAUUUGUGGCGUUGAGCUGGGCUAAAGAUACGUUUGUCCUUGACCCGUUCGUGGGGUCAA-UUCCCCCAACAGCGUCACCGU
(((((-(.(.(.....)).))))))........((((((((((((.(((.(((.((((....)))).))).))))))).(((((....-...)))))..))))))))... ( -39.10, z-score =  -2.18, R)
>consensus
GCUGU_CUGACUAUCUGCUGACAGCGGAUAUUUGUGGCGUUGAGCUGGGCUAAAGAUACGUUUGUCCUUGACCCGUUCGUGGGGUCAA_UUCCCCCAACAGCGUCACCGU
...........(((((((.....)))))))...((((((((((((.(((.(((.((((....)))).))).))))))..(((((........))))).)))))))))... (-35.74 = -35.90 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:22 2011