| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,733,600 – 17,733,717 |
| Length | 117 |
| Max. P | 0.939150 |
| Location | 17,733,600 – 17,733,717 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.73 |
| Shannon entropy | 0.43450 |
| G+C content | 0.41816 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -21.64 |
| Energy contribution | -24.82 |
| Covariance contribution | 3.19 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17733600 117 - 22422827 UAUACUAUAUGAUGCUAUAGGUGCUAUAUGGCAUACGCUCAAGUGUUGUAUGCUAUAUGGCCCUAGUAUCAGAUUGCGUGGCAAUUUGAACACGUUCCGCGGUUUUCCAUUGUUUUU--- .........(((((((..(((.((((((((((((((((......).)))))))))))))))))))))))))(((((((..((...........))..))))))).............--- ( -41.40, z-score = -3.78, R) >droSec1.super_8 43577 116 - 3762037 ---ACCUUAUGGUGCUAUAGGUGCUAUAUGGCAUAUGCUCAAAUGUUGUAUGUUAUAUGGCCCUAGUAUCAGAUCGUGUGGCAUUUUGAACACGUUCCGCGGUUUUCCAUUGUUUUUGA- ---......(((((((..(((.((((((((((((((((......).)))))))))))))))))))))))))(((((((..((...........))..)))))))...............- ( -35.90, z-score = -2.42, R) >droYak2.chrX 16361108 100 - 21770863 --------------------GUGGUAUAUGGCAUAUGCCUAAAUGAUGCGUGCAUUGUGGCCCUUGUAUCAGAUCGUGUGGCAUUUUGAACACGUUCCGCGGUUUUCCAUUGUUUUUUGA --------------------((((...(((.((.(((((((..(((((((.((......))...))))))).....)).)))))..))....))).))))((....))............ ( -22.70, z-score = 1.02, R) >droEre2.scaffold_4690 8070019 101 - 18748788 ---GCUGUAUGGUGCUAUAUGUGCUAUAUGGCA---------------UAUGCUAUGUGGCCCUUGUAUCAGAUCGUGUGGCAUUUUGAACAAGUUCCGUGGCAUUCCAUUGUUUUUGA- ---((..((((((.(((((((.((((((((((.---------------...))))))))))...))))).))))))))..))........((((..(.((((....)))).)..)))).- ( -32.40, z-score = -1.85, R) >consensus ___ACU_UAUGGUGCUAUAGGUGCUAUAUGGCAUAUGCUCAAAUGUUGUAUGCUAUAUGGCCCUAGUAUCAGAUCGUGUGGCAUUUUGAACACGUUCCGCGGUUUUCCAUUGUUUUUGA_ ..........((((((..(((.((((((((((((((...........)))))))))))))))))))))))((((((((..((...........))..))))))))............... (-21.64 = -24.82 + 3.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:19 2011