| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,730,383 – 17,730,437 |
| Length | 54 |
| Max. P | 0.623427 |
| Location | 17,730,383 – 17,730,437 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 60.71 |
| Shannon entropy | 0.55349 |
| G+C content | 0.43207 |
| Mean single sequence MFE | -11.93 |
| Consensus MFE | -4.65 |
| Energy contribution | -4.77 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17730383 54 - 22422827 GAAAAAAGGUCGUGGGAGC-ACGACAUUGAGGAAAGAUCGCUGAGGUAUUUCAAU-- ........((((((....)-)))))......((((.(((.....))).))))...-- ( -14.00, z-score = -2.77, R) >droPer1.super_14 1596974 50 - 2168203 -------GCUCGUGGGAGCUGCGACAUUGACGACGAGUAGUAGAUUUAUUUGUUUUU -------((((....))))............(((((((((.....)))))))))... ( -10.60, z-score = -0.66, R) >droMoj3.scaffold_6473 2662730 51 - 16943266 GCAAAAAGGUCGUGGGAGC-GCGACAUUGACAAUAGAUCUUCAA--UCUUUAAA--- ....((((((((((....)-)))))(((((..........))))--)))))...--- ( -11.20, z-score = -1.59, R) >consensus G_AAAAAGGUCGUGGGAGC_GCGACAUUGACGAAAGAUCGUAGA__UAUUUAAAU__ ........((((((....).)))))................................ ( -4.65 = -4.77 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:18 2011