| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,726,739 – 17,726,792 |
| Length | 53 |
| Max. P | 0.965265 |
| Location | 17,726,739 – 17,726,792 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 91.13 |
| Shannon entropy | 0.15786 |
| G+C content | 0.34717 |
| Mean single sequence MFE | -10.38 |
| Consensus MFE | -7.54 |
| Energy contribution | -8.14 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17726739 53 + 22422827 UACACAAUUUUACAGUUUGCAUUGCAAAUACAGUCAAACUGCGGAUUACAACA ........((..(((((((.((((......)))))))))))..))........ ( -11.20, z-score = -2.99, R) >droSim1.chrX 13792250 53 + 17042790 UACACAAUUUUACAGUUUGCAUUGCUAAUACAGUCAAACUGCGGAUUACAACA ........((..(((((((.((((......)))))))))))..))........ ( -11.20, z-score = -2.96, R) >droSec1.super_8 37002 53 + 3762037 UACACAAUUUUACAGUUUGCAUUGCUAAUACAGUCAAACUGCGGAUUACAACA ........((..(((((((.((((......)))))))))))..))........ ( -11.20, z-score = -2.96, R) >droYak2.chrX 16354219 53 + 21770863 CACACCAUUUUACAGUUUGCAUUGCAAAUACAGUCAAACUUCGGAUUACCACA .............((((((.((((......))))))))))..((....))... ( -7.30, z-score = -1.90, R) >droEre2.scaffold_4690 8063215 53 + 18748788 UACACAAUUUUACAGUUUGCAUUGGAAAUACAGGCAAACUUUGGAUUACGAAG ........((((.(((((((.(((......)))))))))).))))........ ( -11.00, z-score = -4.10, R) >consensus UACACAAUUUUACAGUUUGCAUUGCAAAUACAGUCAAACUGCGGAUUACAACA ........((..(((((((.((((......)))))))))))..))........ ( -7.54 = -8.14 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:17 2011