| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,725,638 – 17,725,730 |
| Length | 92 |
| Max. P | 0.672075 |
| Location | 17,725,638 – 17,725,730 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 75.40 |
| Shannon entropy | 0.43634 |
| G+C content | 0.54075 |
| Mean single sequence MFE | -37.15 |
| Consensus MFE | -17.67 |
| Energy contribution | -18.98 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17725638 92 - 22422827 UGCAGAGCUCGUAAGCGGAGCUAAAGCUCCGUCUUAAGCGGGAGAGUCUUCGGCUU---------------UGGUUGUAACUCUGUCUCUGG--CUGUGGCUUCUGCCA ..(((((((((((((((((((....)))))).)))..)))))(((((...((((..---------------..))))..)))))..))))).--...((((....)))) ( -37.00, z-score = -1.94, R) >droSim1.chrX 13791220 92 - 17042790 UGCGGAGCUCGUAAGCGGAGCUAAAGCUCCGUCUUAAGCGGCAGAGUCUUCGGCUU---------------UGGUUGUAACUCUGGCUCUGG--CUGUGGCUUCUGCCA ......(((..((((((((((....)))))).)))))))(((((((((..(((((.---------------.((((........))))..))--))).))).)))))). ( -41.20, z-score = -2.67, R) >droSec1.super_8 35969 92 - 3762037 UGCGGAGUUCGUAAGCGGAGCUAAAGCUCCGUCUUUAGCGGCAAAGUCUUCGGCUU---------------UGGUUGUAACUCUGGCUCUGG--CUGUGGCUUCUGCCA ...((((((((((((((((((....)))))).)))..))).(((((.(....))))---------------)).....))))))(((...((--(....)))...))). ( -35.30, z-score = -1.71, R) >droYak2.chrX 16353182 107 - 21770863 UGCAGAGCUCGUAACCGGAGUUUAAGCUCCCUCCUAACAGCCAGAGUCUUCUGCUUUGGCUAAGACUGUUCAGACUGUUUCUGUAGCUGUGG--CUGUGGCUUCUGCCA .((((((((.......(((((....)))))......(((((((.((((((..((....)).))))))(((((((.....)))).)))..)))--))))))).))))).. ( -39.70, z-score = -2.03, R) >droEre2.scaffold_4690 8062075 97 - 18748788 UGCGGUGCUCGUAACCGGAGUUUAAGCUCCGUCCUAAGCGGCAGAGUCUUCGGAUU----------UGCUUUGGCUGUAAUUGUGGCUGUGG--CUGUGGCUUCUGCCA .(((((.......)))(((((....))))).......))(((((((((....))).----------.(((.((((..((........))..)--))).))).)))))). ( -36.00, z-score = -1.40, R) >droAna3.scaffold_13117 5217359 94 + 5790199 UGCGGAGC------ACGGAGCU-AAACUCCGUUUGAAGCGGCAGAGUCUUUGGCCUCG--------GGCUUUGGAUUCGAAUGUGUGUAUGGAAAUGUGGCUUCUGCCA ....(.((------(.((((((-(...(((((.....(((...((((((..((((...--------))))..))))))...)))....)))))....))))))))))). ( -33.70, z-score = -1.38, R) >consensus UGCGGAGCUCGUAAGCGGAGCUAAAGCUCCGUCUUAAGCGGCAGAGUCUUCGGCUU_______________UGGUUGUAACUCUGGCUCUGG__CUGUGGCUUCUGCCA ......(((.....(((((((....)))))))....)))(((((((((..................................................))).)))))). (-17.67 = -18.98 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:16 2011