| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,724,638 – 17,724,722 |
| Length | 84 |
| Max. P | 0.942164 |
| Location | 17,724,638 – 17,724,722 |
|---|---|
| Length | 84 |
| Sequences | 3 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 89.68 |
| Shannon entropy | 0.14212 |
| G+C content | 0.55084 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -20.00 |
| Energy contribution | -20.53 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942164 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 17724638 84 - 22422827 GAGGGGGGAGGAGAGUUAGGAGCAGGAGGCAAGGAGACGGUGCCUCUUCUACCUGCUGGAUAAAGCAAAAACAAGAAAGGAGAG ..............((((((((.((((((((.(....)..)))))))))).)))(((......)))...)))............ ( -23.80, z-score = -2.22, R) >droSim1.chrX 13790205 84 - 17042790 ACGGGGGGAGGAGAGUUAGGAGCAGGAGGCAAGGAGACGGUGCCUCUUCUACCUGCUGGAUAAAGCAAAAACAAGAAAGGAGAG .(((.(((.(((..((.....)).(((((((.(....)..)))))))))).))).))).......................... ( -24.30, z-score = -2.14, R) >droYak2.chrX 16352050 74 - 21770863 GCGGGGGGAGGAGAGUUGGGAGCAGGAGGCAAGGAGACGGUGCCUCUUCUACCU----------GCAAAAACAAGAAAGGAGAG (((((..(((((...(((....)))..((((.(....)..)))))))))..)))----------)).................. ( -26.10, z-score = -3.20, R) >consensus GCGGGGGGAGGAGAGUUAGGAGCAGGAGGCAAGGAGACGGUGCCUCUUCUACCUGCUGGAUAAAGCAAAAACAAGAAAGGAGAG ..............((((((((.((((((((.(....)..)))))))))).)))(((......)))...)))............ (-20.00 = -20.53 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:15 2011