| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,709,581 – 17,709,651 |
| Length | 70 |
| Max. P | 0.727953 |
| Location | 17,709,581 – 17,709,651 |
|---|---|
| Length | 70 |
| Sequences | 8 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 75.70 |
| Shannon entropy | 0.51018 |
| G+C content | 0.45504 |
| Mean single sequence MFE | -15.46 |
| Consensus MFE | -10.31 |
| Energy contribution | -10.78 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727953 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17709581 70 - 22422827 UUUGUGCACCUCGAUUGGUUAAUUGGCAUUUGAUCUUCG--GGCUCAUCAGCUAAUUAACGCUAGCCGAUCC ............(((((((((((((((...(((((....--)).)))...))))))))......))))))). ( -19.20, z-score = -1.81, R) >droSim1.chrX_random 4555463 70 - 5698898 UUUGUGCACCUCGAUUGGUUAAUUGGCAUUUGAUCUGCG--GGCUCAUCAGCUAAUUAACGCUAGCCGUUCC ....((((..((((.((.(.....).)).))))..))))--((((....(((........)))))))..... ( -14.60, z-score = 0.33, R) >droSec1.super_8 19866 70 - 3762037 UUUGUUCACCUCGAUUGGUUAAUUGGCAUUUGAUCUGCG--GGCUCAUCAGCUAAUUAACGCUAGCCGAUCC ............(((((((((((((((...(((((....--)).)))...))))))))......))))))). ( -16.20, z-score = -0.69, R) >droYak2.chrX 16335485 70 - 21770863 UUUGUGCACCUCGAUUGGUUAAUUGGCAUUUGAUCUUCC--GGCUCAUCAGCUAAUUAACACUAGCCAAUCC ............(((((((((((((((...(((.(....--.).)))...))))))))......))))))). ( -16.30, z-score = -1.94, R) >droEre2.scaffold_4690 8045934 70 - 18748788 UUUGUGCACCCCGAUUGGUUAAUUGGCAUUUGAUUUCUG--GGCUCAUCAGCUAAUUAACGCUAGCCGAUCC ............(((((((....((((..((((((.(((--(.....))))..)))))).))))))))))). ( -16.10, z-score = -0.50, R) >dp4.chrXL_group1e 12103102 72 - 12523060 UGUGCGCACUUUUGGUGGUUAAUUGGCAUUUGAUCUUUGGGGGCUCAUCAACUAAUUAACGCUCAACGACUU ((.((.(((.....)))(((((((((....((((((....))).)))....))))))))))).))....... ( -16.00, z-score = -1.26, R) >droVir3.scaffold_12928 5141001 60 + 7717345 -------AUCCCAAGGUGUCAAUUGGCAUUUGAUCCUUG--GACUCAUCAGGUAAUUAACGCAUGCCGC--- -------...((((((.(((((.......))))))))))--)........((((.........))))..--- ( -15.40, z-score = -1.10, R) >droMoj3.scaffold_6473 2598482 53 + 16943266 -----------------GUAAAUUGGCAUUUGAUCCUUG--GGCUCAUCAGGUAAUUAACGCACAGCGGUGC -----------------((.(((((.(...(((.((...--)).)))...).))))).))((((....)))) ( -9.90, z-score = 0.26, R) >consensus UUUGUGCACCUCGAUUGGUUAAUUGGCAUUUGAUCUUCG__GGCUCAUCAGCUAAUUAACGCUAGCCGAUCC .................((((((((((...(((.((.....)).)))...))))))))))............ (-10.31 = -10.78 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:15 2011