| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,675,932 – 17,675,998 |
| Length | 66 |
| Max. P | 0.887085 |
| Location | 17,675,932 – 17,675,998 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 67.61 |
| Shannon entropy | 0.49774 |
| G+C content | 0.65170 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -15.30 |
| Energy contribution | -14.80 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887085 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 17675932 66 - 22422827 GUAAACGAGUGUGGGUGGAUGGGGAAGGCGUUUCGUCCUGCCCCGU-CUUCCACCCCCUCCCCCCGC--------- ......(((.(.((((((((((((.(((((...)).))).))))).-..))))))))))).......--------- ( -28.90, z-score = -2.60, R) >droSim1.chrU 5012735 67 + 15797150 GUAAACGAGUGUGGGUGGAUGGGGGGAGCGUUUGGUCCUGCCCCGGUCUUCUACCCCCUCCCCCCGC--------- ..........(((((.(((.(((((.((.....((.((......)).)).)).)))))))).)))))--------- ( -26.30, z-score = -0.11, R) >droSec1.super_17 1522092 66 - 1527944 GUAAACGAGUGUGGGUGGAUGGGGGGAGCGCUUGGUCCUGCCCCGA-CUUCUACCCCCUCCCCCCGC--------- ..........(((((.(((.(((((.((...((((.......))))-...)).)))))))).)))))--------- ( -26.60, z-score = -0.63, R) >droYak2.chrX 16303938 75 - 21770863 GUAAACGAGUGGUGGUGUGCUGGUGUUUGUUCCCGACUUCUAACAC-CCCCCGCUCCCUCCAUCCCCACCAUCUCC ......(((((((((.(((..((((((.(((...)))....)))))-)...)))...........)))))).))). ( -19.00, z-score = -2.20, R) >consensus GUAAACGAGUGUGGGUGGAUGGGGGGAGCGUUUCGUCCUGCCCCGA_CUUCCACCCCCUCCCCCCGC_________ ......(((.(.(((((((..((((.((.(.....).)).)))).....)))))))))))................ (-15.30 = -14.80 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:13 2011