| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,669,044 – 17,669,135 |
| Length | 91 |
| Max. P | 0.824370 |
| Location | 17,669,044 – 17,669,135 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 60.83 |
| Shannon entropy | 0.69693 |
| G+C content | 0.42732 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.37 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17669044 91 + 22422827 UCGGCCAACGGCACAAUGCUAAGCCACUAAAUGGCU---CAUUGUAUGCCAUGCAUUCAUUUUGCUGGAAAGUGAGUCGAGUGAAUAAUUGCAG------------ ...((....(((((((((...(((((.....)))))---))))))..)))...(((((..((..((....))..))..))))).......))..------------ ( -27.20, z-score = -1.49, R) >droSim1.chrX_random 4543330 91 + 5698898 UCGGCCGACGGCACAAUGCUAAGCCACUAAAUGGCU---CAUUGUAUGCCAUGCAUUCAUUUCGCUGGAAAGUGAGUCGAGUGAAUAAUUGCAG------------ ...((....(((((((((...(((((.....)))))---))))))..)))...(((((..((((((....))))))..))))).......))..------------ ( -29.60, z-score = -2.11, R) >droSec1.super_17 1515057 91 + 1527944 UCGGCCGACGGCACAAUGCUAAGCCACUAAAUGGCU---CAUUGUAUGCCAUGCAUUCAUUUCGCUGGAAAGUGAGUCGAGUGAAUAAUUGCAG------------ ...((....(((((((((...(((((.....)))))---))))))..)))...(((((..((((((....))))))..))))).......))..------------ ( -29.60, z-score = -2.11, R) >droEre2.scaffold_4690 8010490 91 + 18748788 UCAGCCGACGGCACAAUGCUAAGCCACUAAAUGGCU---CAUUGUAGGCCAGGCAUUCAUUGCCCUGGAAAGUGAGUGGAGUGAAUAAUUGCAG------------ ...(((...(((((((((...(((((.....)))))---))))))..))).)))(((((((.((((........)).)))))))))........------------ ( -28.10, z-score = -1.00, R) >droAna3.scaffold_13335 2967160 106 - 3335858 UCACUCACUGAUACAAAGUAGAGCUGCUAAAUUACCUCAAACUGAUUGCUGUUUGAUUCUCAAUAGCUAUCCUGUAUUUAACAGCCAUUUCAAUGACUUCAUUCCC ....(((.((((((...)))(.((((.(((((........((.(((.((((((.(.....))))))).)))..))))))).)))))...))).))).......... ( -14.80, z-score = -0.33, R) >droWil1.scaffold_181096 4022242 85 + 12416693 -----CAAACAAAUUAUACAUUAACUGUAAGUGAGU---GAGUGUAUUUGAUGAGAGCUUUCGUACGAAAAGUGAAUGCAA-AUUUAAUUGAAG------------ -----(((..(((((...((((.(((....(((...---((((...((....))..))))...)))....))).))))..)-))))..)))...------------ ( -10.50, z-score = 0.78, R) >consensus UCGGCCAACGGCACAAUGCUAAGCCACUAAAUGGCU___CAUUGUAUGCCAUGCAUUCAUUUCGCUGGAAAGUGAGUCGAGUGAAUAAUUGCAG____________ .........(((((((((...(((((.....)))))...))))))..)))....(((((((.((((........)).))))))))).................... (-10.19 = -10.37 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:12 2011