| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,651,671 – 17,651,770 |
| Length | 99 |
| Max. P | 0.773203 |
| Location | 17,651,671 – 17,651,770 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.55 |
| Shannon entropy | 0.48792 |
| G+C content | 0.52343 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -11.24 |
| Energy contribution | -10.76 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17651671 99 + 22422827 CCUUUGUUGUCCUUUUCGCGCUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGGCACUUCGUCCCCGUCCCCGUCCCACCACCCUUACUCCUU-CACCGAA ...(((.((....((((((((.....))))))))..(((((((....))).)))).....................................-)).))). ( -12.80, z-score = -0.84, R) >droSim1.chrX 13745911 93 + 17042790 CCUUUGUUGUCCUUUUCGCGCUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGGCACU------CUGCCACCGUCCCACCUCCCUUACUCCUU-CACCGAA .......((.(..((((((((.....))))))))...).))..........(((...------..)))........................-....... ( -15.40, z-score = -1.94, R) >droSec1.super_17 1497964 93 + 1527944 CCUUUGUUGUCCUUUUCGCGCUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGGCACU------CCGCCCCCGUUCCACCCCCCUUACUCCUU-CACCGAA .......((.(..((((((((.....))))))))...).))..........(((...------..)))........................-....... ( -14.20, z-score = -1.70, R) >droEre2.scaffold_4690 7986660 90 + 18748788 CCUGUAUUGUCCUUUUUGCGCUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGGCACC---------ACGCCCCGCCGCCGCCCUCACUCCUU-CGCCCAA ...............(((.((.(((.(.((((...................(((...---------..)))..((....))..)))).))))-.)).))) ( -13.00, z-score = 0.52, R) >droAna3.scaffold_13335 2949563 92 - 3335858 UCCUUGUUGUCCUUUUUGCGUUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGACACU-------CUCGGGUGGCGCGUUAUCCUUGCCUUGUCUGGUAA- .....((..(((.(((..(((.....)))..)))..(((((((....))).))))..-------...)))..))..........((((......)))).- ( -20.80, z-score = -0.98, R) >dp4.chrXL_group1e 12039415 98 + 12523060 CCUUUGUUGUCCUUUUUGCGCUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGGCAAGCAG--CGCACCGCUGCUGUCUCAUCCUCAUCCUCGGCAUCCUG .......((((..(((..(((.....)))..))).................((((.((((--((...))))))))))..............))))..... ( -24.10, z-score = -1.54, R) >droPer1.super_14 597134 98 - 2168203 CCUUUGUUGUCCUUUUUGCGCUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGGCAAGCAG--CGCACCGCUGCUGUCUCAUCCUCAUCCUCGGCAUCCUG .......((((..(((..(((.....)))..))).................((((.((((--((...))))))))))..............))))..... ( -24.10, z-score = -1.54, R) >consensus CCUUUGUUGUCCUUUUUGCGCUAAGCGCGUGAAAUUUGUCAUAUCCUUAUCGGCACU______CCGCCGCCGCCCCACCACCCUUACUCCUU_CACCCAA .............((((((((.....))))))))..(((((((....))).))))............................................. (-11.24 = -10.76 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:10 2011