| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,639,923 – 17,640,013 |
| Length | 90 |
| Max. P | 0.951421 |
| Location | 17,639,923 – 17,640,013 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 81.09 |
| Shannon entropy | 0.33442 |
| G+C content | 0.32323 |
| Mean single sequence MFE | -15.18 |
| Consensus MFE | -9.60 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17639923 90 - 22422827 AUUCGAAUUCAGGUUAUCAGACCUGUUUUCCAAAUAAAAAAAAACUCUGCGUAUCUGUCUCAUUGUACUUAAAAACCAUG-AAACAUUUAC ....(((..((((((....))))))..)))....................(((..(((.((((.((........)).)))-).)))..))) ( -16.90, z-score = -3.25, R) >droSim1.chrX 13736125 90 - 17042790 AUUCGAAUUCAGGUUAUCAGACCUGUUUUCCAAAU-AAAAAGAACUCUGCAUAUCUGUUUCUUUGUAUUUAAAAACCAUGAAAACAUUUAC .((((((..((((((....))))))..))).((((-(.((((((....(((....))))))))).))))).........)))......... ( -16.20, z-score = -2.38, R) >droSec1.super_17 1486322 90 - 1527944 AUUCGAAUUCAGGUUAUCAGACCUGUUUUCCAAAUAAAAAAAAACUCUGCGUAUCUGUCUCAUUGUACUUAAAAACCAUG-AAACAUUUAC ....(((..((((((....))))))..)))....................(((..(((.((((.((........)).)))-).)))..))) ( -16.90, z-score = -3.25, R) >droYak2.chrX 16267873 71 - 21770863 AUCCGAAUUCAGGUUAUCAGACCUGUUUUCUAAGU--------AUUC-----------CUCAUUGUACCUAUAAACCAUG-ACACAUUUAC ....(((..((((((....))))))..))).....--------....-----------.((((.((........)).)))-)......... ( -12.40, z-score = -2.21, R) >droEre2.scaffold_4690 7975246 85 - 18748788 AUCCGAAUUCAGGUUAUCAGACCUGUUUCCUAAAU---AACAAACGCUGAGUAUCUGUUUCAUUGUA--UAUACACCAUG-ACUCAUUUAC ....(((..((((((....)))))).)))......---............(((..((..((((.((.--.....)).)))-)..))..))) ( -13.50, z-score = -0.96, R) >consensus AUUCGAAUUCAGGUUAUCAGACCUGUUUUCCAAAU_AAAAAAAACUCUGCGUAUCUGUCUCAUUGUACUUAAAAACCAUG_AAACAUUUAC ....(((..((((((....))))))..)))............................................................. ( -9.60 = -9.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:08 2011