| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,638,302 – 17,638,357 |
| Length | 55 |
| Max. P | 0.804702 |
| Location | 17,638,302 – 17,638,357 |
|---|---|
| Length | 55 |
| Sequences | 6 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 80.97 |
| Shannon entropy | 0.37239 |
| G+C content | 0.36970 |
| Mean single sequence MFE | -9.92 |
| Consensus MFE | -6.81 |
| Energy contribution | -6.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17638302 55 + 22422827 GCCAAAAAUUACCAAAUUAUUACACACUCGCCGGAGAUUUGGUGUAAUAUACUAG .................((((((((.(((....))).....))))))))...... ( -9.00, z-score = -1.70, R) >droEre2.scaffold_4690 7973647 55 + 18748788 GCCAAAAAUUACCAAAUUAUUACACACUCGCCGGAGAUUAGGUGUAAUAUACUAG .................((((((((.(((....))).....))))))))...... ( -9.00, z-score = -1.87, R) >droYak2.chrX 16266123 55 + 21770863 GCCAAAAAUUACCAAAUUAUUACACACUCUCCGGGGAUUUGGUGUAAUAUACUAG .................((((((((..(((....)))....))))))))...... ( -9.40, z-score = -1.20, R) >droSec1.super_17 1484704 55 + 1527944 GCCAAAAAUUACCAAAUUAUUACACACUCACCUGAGAUUUGGUGUAAUAUACUAG .................((((((((.(((....))).....))))))))...... ( -9.20, z-score = -2.46, R) >droSim1.chrX 13734503 55 + 17042790 GCCAAAAAUUACCAAAUUAUUACACACUCACCUGAGAUUUGGUGUAAUAUACUAG .................((((((((.(((....))).....))))))))...... ( -9.20, z-score = -2.46, R) >droMoj3.scaffold_6328 1081794 55 - 4453435 GCCAAAGCUUUGGCAAUUAUUGCGUCUGCGUAGCUGUUUGUGAGUCAUGCGCUUA (((((....))))).......((((.(((...((.....))..).)).))))... ( -13.70, z-score = 0.26, R) >consensus GCCAAAAAUUACCAAAUUAUUACACACUCGCCGGAGAUUUGGUGUAAUAUACUAG .................((((((((.(((....))).....))))))))...... ( -6.81 = -6.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:07 2011