| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,637,665 – 17,637,771 |
| Length | 106 |
| Max. P | 0.877867 |
| Location | 17,637,665 – 17,637,771 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 83.16 |
| Shannon entropy | 0.21658 |
| G+C content | 0.44976 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -24.07 |
| Energy contribution | -23.85 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17637665 106 - 22422827 UCGGUUGAGCGAUAUAUGUGUACAUAUGUGAUAUAUAUGAUCUGAUGGAACCAUGGAGUCGCAGUCUUCAGUCUGCGGCGAUAAGGGGUCGGUCGAUCAAUAAUGA ..((((((.((((((((((((((....)).))))))))............((.((..(((((((.(....).)))))))..)).)).)))).))))))........ ( -33.80, z-score = -1.55, R) >droSec1.super_17 1484109 85 - 1527944 UCGGUUGAGCGAUACAUGUG------------AUAUAUGAUCU-AUGGAACCAUGGAGUCGCAGUCU----UCUGCGGCGAUAAGGC----GUCGAUCAAUAAAAA ..((((((((....(((((.------------..))))).(((-(((....))))))(((((((...----.)))))))......))----.))))))........ ( -27.80, z-score = -2.40, R) >droSim1.chrX 13733908 85 - 17042790 UCGGUUGAGCGAUACAUGUG------------AUAUAUGAUCU-AUGGAACCAUGGAGUCGCAGUCU----UCUGCGGCGAUAAGGG----GUCGAUCAAUAAUGA ...(((((.((((.(((((.------------..))))).(((-(((....))))))(((((((...----.)))))))........----)))).)))))..... ( -27.50, z-score = -1.94, R) >consensus UCGGUUGAGCGAUACAUGUG____________AUAUAUGAUCU_AUGGAACCAUGGAGUCGCAGUCU____UCUGCGGCGAUAAGGG____GUCGAUCAAUAAUGA ...(((((.((((.((((((.............))))))...........((.((..(((((((........)))))))..)).)).....)))).)))))..... (-24.07 = -23.85 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:06 2011