| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,632,087 – 17,632,204 |
| Length | 117 |
| Max. P | 0.741824 |
| Location | 17,632,087 – 17,632,204 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 126 |
| Reading direction | forward |
| Mean pairwise identity | 73.35 |
| Shannon entropy | 0.42474 |
| G+C content | 0.58432 |
| Mean single sequence MFE | -42.36 |
| Consensus MFE | -26.28 |
| Energy contribution | -28.97 |
| Covariance contribution | 2.69 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17632087 117 + 22422827 UCGCCGCGGUAGCUAUCAUUUUUACCGCUAUUGUGGCGUUGUU--GUAGCCCUCUCUCGUUGGUGCUCUCUGCGCAUGGGCAGCACCCUCGAUGGGCAGCACUGACGA-------UCGUCGACUGC .((((((((((((.............))))))))))))....(--((.((((....(((..(((((((((.......))).))))))..))).)))).))).((((..-------..))))..... ( -47.62, z-score = -2.39, R) >droSec1.super_17 1478561 113 + 1527944 UCGCUGCGGUAGCUAUAAUUUUUACCGCUAUUGUGGCGUUGUU--GUAGCCCUCUCUCGCUGGCGCUCUCUGCGC------AGCACCCUCGAUGGGCAGCACUGACGAG-----AUCGUCGACUGC ..(((((((..((((((((.....((((....))))....)))--)))))))......((((.(((.....))))------)))..((.....)))))))..(((((..-----..)))))..... ( -41.90, z-score = -1.28, R) >droYak2.chrX 16259848 104 + 21770863 UUGCUGCAGUAGCUAUCAUUUUCACCGCUGCUGUGGCAUUGUU--GUAGCCC------------------UGCGCAUGUGCAG--CCCUCGAUGGGCAGCGCUGUCGACUGACGAUCGUCGGCUGC .(((..(((((((.............)))))))..))).....--((((((.------------------..((((.((((.(--(((.....)))).)))))).))...(((....))))))))) ( -45.82, z-score = -2.17, R) >droEre2.scaffold_4690 7967412 106 + 18748788 --------GUAGCUAUUAUUUUCACCGCUAUUGUGGCCUCUCUCGAUAGCCC-----CACUGGCGCUCUCUGCGCAUGGGCAGCACCCUCGAUGGGCAGCACUGGCGA-------UCGUCGACUGC --------...(((............(((((((.((....)).)))))))((-----((...((((.....)))).)))).)))....(((((((...((....))..-------))))))).... ( -34.10, z-score = 0.03, R) >consensus UCGCUGCGGUAGCUAUCAUUUUCACCGCUAUUGUGGCGUUGUU__GUAGCCC_____CGCUGGCGCUCUCUGCGCAUGGGCAGCACCCUCGAUGGGCAGCACUGACGA_______UCGUCGACUGC .((((((((((((.............))))))))))))..........((((..........((((.....))))..(((.....))).....)))).(((.((((((.......))))))..))) (-26.28 = -28.97 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:04 2011