| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,629,819 – 17,629,915 |
| Length | 96 |
| Max. P | 0.954150 |
| Location | 17,629,819 – 17,629,915 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 86.24 |
| Shannon entropy | 0.22307 |
| G+C content | 0.47751 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -25.00 |
| Energy contribution | -25.94 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17629819 96 - 22422827 GUAUGUGUCUGGGAUCUCUGGUCUUUAUAAAGAGCCCCAGGCCCCUUGGGUUCCCAGACGAAGGCAUUAUUAUUGUGAUUAUGAUUGUGCCGUUGA .....(((((((((...((((.((((....))))..))))((((...)))))))))))))..(((((.(((((.......))))).)))))..... ( -34.20, z-score = -3.07, R) >droSim1.chr3L 15819767 91 + 22553184 -----UGUCUGGCAUCUCUGGUCUUUAAAAAGAGCCCCAGGCCCCUUGGGUUCCCAGACGAAGGCAUUAUUAUUGUGAUUAUGAUUGUGCCGUUGA -----.((((((((....))...........((((((.((....)).))))))))))))...(((((.(((((.......))))).)))))..... ( -29.40, z-score = -2.13, R) >droSec1.super_17 1475250 96 - 1527944 GUAUGUGUCUGGCAUCUCUGGUCUUUAAAAAGAGCCCCAGGCCCCUUGGGUUCCCAGACGAAGGCAUUAUUAUUGUGAUUAUGAUUGUGCCGUUGA .....(((((((((....))...........((((((.((....)).)))))))))))))..(((((.(((((.......))))).)))))..... ( -29.60, z-score = -1.97, R) >droYak2.chrX 16257701 84 - 21770863 --GUGUCUCUGGGAUCUCUGGUCUUUAGAAA----------CCCCCUGGGUUCCCAGAGCAAGGCGUUAUUAUGGUGAUUAUGAGUGUGCCGUUGA --.((.((((((((.(((.(((........)----------))....))).)))))))))).((((...(((((.....)))))...))))..... ( -26.50, z-score = -1.46, R) >consensus __AUGUGUCUGGCAUCUCUGGUCUUUAAAAAGAGCCCCAGGCCCCUUGGGUUCCCAGACGAAGGCAUUAUUAUUGUGAUUAUGAUUGUGCCGUUGA ......((((((((.(((.(((((..............)))))....))).))))))))...(((((.(((((.......))))).)))))..... (-25.00 = -25.94 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:03 2011