| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,623,575 – 17,623,673 |
| Length | 98 |
| Max. P | 0.720566 |
| Location | 17,623,575 – 17,623,673 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.37241 |
| G+C content | 0.46367 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -17.67 |
| Energy contribution | -17.93 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17623575 98 - 22422827 -------GAACCGGGAAUGGCGUACG-UAUGUAUCUCAAU-CCCAAUAAAGGGAGUUCAUGUUAAGGUAUAAAUACGUGAGCGGGAAUGAUUUUCAUCGCAGAUCCG -------......(((...(((....-....((((((..(-(((......))))((((((((............))))))))))).)))........)))...))). ( -25.69, z-score = -1.18, R) >droSim1.chrX 13727286 91 - 17042790 ----------GCGGGGAUGGCGUACG-----UAUCUCAAU-CCCAAUAAAGGGAGUUCAUGUAAAGGUAUAAAUACGUGAGCGGGAAUGAUUUUCAUCGCAGAUUCG ----------...(.(((((....((-----(.((((..(-(((......))))(((((((((..........))))))))))))))))....))))).)....... ( -26.10, z-score = -2.26, R) >droYak2.chrX 16251315 101 - 21770863 -----GGAAUGGAGGGGGGGUACGUACUACGUAUCUCAAU-CCCAAUAAAGGGAGUUCAUGUUAGAGGUAUAAUACGUGAGCGGGAAUGAUUUUCAUCGCAGAUCCG -----(((.((((...((((((((.....))))))))..(-(((......))))((((((((............)))))))).((((....)))).)).))..))). ( -29.70, z-score = -1.98, R) >droEre2.scaffold_4690 7958579 106 - 18748788 GGGAAGGGAAAGGGGAAGGCGGUAGGGUACGUAUCUCAAUCCCCAAUAAAGGGAGUUCAUG-UAGAGGCAUAGUACGUGAGUGGGAAUGAUUUUCAUCGCAGAUCCG .............(((..((((((((((.(((.(((((.((((.......)))).((((((-((.........))))))))))))))))))))).)))))...))). ( -27.40, z-score = -0.91, R) >consensus _______GAAGCGGGAAGGGCGUACG_UACGUAUCUCAAU_CCCAAUAAAGGGAGUUCAUGUUAAAGGAAAAAUACGUGAGCGGGAAUGAUUUUCAUCGCAGAUCCG .............(((...(((...........((((....(((......))).((((((((............))))))))))))...........)))...))). (-17.67 = -17.93 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:02 2011