Locus 15150

Sequence ID dm3.chrX
Location 17,608,500 – 17,608,565
Length 65
Max. P 0.726518
window20878

overview

Window 8

Location 17,608,500 – 17,608,565
Length 65
Sequences 6
Columns 66
Reading direction reverse
Mean pairwise identity 81.12
Shannon entropy 0.36099
G+C content 0.45053
Mean single sequence MFE -17.73
Consensus MFE -12.00
Energy contribution -12.75
Covariance contribution 0.75
Combinations/Pair 1.32
Mean z-score -1.54
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.52
SVM RNA-class probability 0.726518
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17608500 65 - 22422827
GCGAGAUACAUUUGUAUCUGAAACCUGCAAUUUGAGAGUUAGCAGGUGGUGGC-GUCGCUUUAACC
(((((((((....)))))....((((((((((....)))).))))))......-.))))....... ( -19.60, z-score =  -2.11, R)
>droSim1.chrX 3670146 65 + 17042790
GCGAGAUACAUUUGUAUCUGAAACCUGCAAUUUGAGAGUUAGCAGGUGGCGGC-GUCGCUUUAACC
(((((((((....)))))((..((((((((((....)))).))))))..))..-.))))....... ( -21.20, z-score =  -2.48, R)
>droSec1.super_17 1454136 65 - 1527944
GCGAGAUACAUUUGUAUCUGAAACCUGCAAUUUGAGAGUUAGCAGGUGACGGC-GUCGCUUUAACC
(((((((((....)))))((..((((((((((....)))).))))))..))..-.))))....... ( -19.80, z-score =  -2.53, R)
>droYak2.chrX 16236368 65 - 21770863
GUGAGAUACAUUUGUAUCUGAAACCUGCAAUUUGAUAGUUAGCAGGUGGCGGC-GUCGCUUUAACC
(((((((((....)))))((..((((((((((....)))).))))))..))..-.))))....... ( -19.60, z-score =  -2.28, R)
>droEre2.scaffold_4690 7943695 65 - 18748788
GUGAGCUACAUUUGUAUUUGAAACCAGCAAUUUGAUAGUUAGCAGGUGGUGGC-GUCGCUUUAACC
(((((((((.(((......)))(((.((((((....)))).)).))).)))))-.))))....... ( -14.40, z-score =  -0.32, R)
>droAna3.scaffold_13335 275493 61 - 3335858
--UCAAAGUAUUUUUGUUUGG---CAGCAGUUAGUGGGCUAGCAGGUGCAAUCUGAUGUCUUAACC
--.............(((.((---((.(((....((.(((....))).))..))).))))..))). ( -11.80, z-score =   0.48, R)
>consensus
GCGAGAUACAUUUGUAUCUGAAACCUGCAAUUUGAGAGUUAGCAGGUGGCGGC_GUCGCUUUAACC
(((((((((....)))))....((((((((((....)))).))))))........))))....... (-12.00 = -12.75 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:59 2011