| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,729,463 – 11,729,563 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 11,729,463 – 11,729,563 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.40 |
| Shannon entropy | 0.35065 |
| G+C content | 0.44371 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -17.20 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 11729463 100 + 23011544 CCAACCAGCAAUAUGUUGGGGCUUUGUGCCGGUAUGUUCUACAUUCUGUGCAUCCAGAAUGCUAGAAUGUCCUAAAUUCCCACAGCCAAUGCUUGAAUUA ....(((((.....)))))(((.....)))((.(((((((((((((((......))))))).))))))))))..(((((....(((....))).))))). ( -31.10, z-score = -2.73, R) >droEre2.scaffold_4929 12953289 91 - 26641161 CUAGCCAGCAAUAUGCUGAGGCUUUGAGCCAGUAUGUUUAACAUUUUGAACAUGCAGUGAGAUCGAAUGGUCCAAAUUCGCACAGCCAAUU--------- .....((((.....)))).((((........((((((((((....)))))))))).(((....(((((.......))))))))))))....--------- ( -25.60, z-score = -1.93, R) >droYak2.chr2L 8147081 100 + 22324452 CUCGCCAGCAAUAUGCUGAGGCUUUGUGCCUGUAUGUUCUGCAUUCUGUGCAAGGAAAAUGCUUGAAUUUCCCAAAUACCCACAGCCAGCGCUCGAAUUA ..(((((((.....)))).((((..(((...((((....(((((...))))).((.((((......)))).))..)))).))))))).)))......... ( -23.60, z-score = -0.01, R) >droSec1.super_3 7119676 100 + 7220098 CCAACCAGCAAUAUGUUGGGGCUUUGUGCCGGUAUGUUCCACAUUCUGUGCAUCCAGAAUGCUAGAAUGUACUAAAUUCCCACAGCCAAUGCUUGAAUUA ....(((((.....)))))(((.....)))(((((((((..(((((((......)))))))...))))))))).(((((....(((....))).))))). ( -29.70, z-score = -2.05, R) >droSim1.chr2L 11531568 100 + 22036055 CCAACCAGCAAUAUGUUGGGGCUUUGUGCCGGUAUGUUCCACAUUUUGUGCAUCGAGAAUGCUAGAAUGUACUAAAUUCCCACAGCCAAUGCUUGGAUUA (((((((((.....)))))((((..(((..((......))((((((((.((((.....))))))))))))..........))))))).....)))).... ( -27.60, z-score = -0.89, R) >consensus CCAACCAGCAAUAUGUUGGGGCUUUGUGCCGGUAUGUUCCACAUUCUGUGCAUCCAGAAUGCUAGAAUGUACUAAAUUCCCACAGCCAAUGCUUGAAUUA ....(((((.....)))))((((..(((..(((.((....((((((((.((((.....))))))))))))..)).)))..)))))))............. (-17.20 = -17.80 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:27 2011