| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,599,659 – 17,599,768 |
| Length | 109 |
| Max. P | 0.968339 |
| Location | 17,599,659 – 17,599,768 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 68.78 |
| Shannon entropy | 0.56970 |
| G+C content | 0.36589 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -13.55 |
| Energy contribution | -14.65 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17599659 109 - 22422827 ------GUUUACUCAAUCAAUCAGGCUUUCAGGCUAAUACCAAUAGAUUUUAUAAGGUGACUUUUCAAAUCAUGGCUGGUUGA---GCUAUGACAGUCGCUUUAGUAAGUGAGCGAUA ------(((..((((((((..((((((....))))..........(((((...(((....)))...))))).))..)))))))---)....))).(((((((........))))))). ( -32.70, z-score = -3.28, R) >droWil1.scaffold_180777 2172941 107 - 4753960 UAUGAAAAUUAUACA--UAAUUAUGUAUAUAUGUAAGUAUAAUCAGAUGCGAGCCUGUUUCGCUUAUGGUUCAGAUUAUCUGAAAUACUAAAAUCAU-GAUUAAUCAAAU-------- (((((....((((((--(....)))))))......(((((..(((((((.(((((............)))))....))))))).)))))....))))-)...........-------- ( -21.70, z-score = -1.99, R) >droSim1.chrX 3661393 108 + 17042790 ------GUUUACUCAAUCAAUCAGGCUUUCGGGCUAAUACCAAUGGAUUUUACAGGGUGACUUUCC-AAUCAUGGUUGGUUGA---GCUGCGACAGUCGCUUUAGUAAGUGAGCGAUA ------((...((((((((((((((((....))))........((((......(((....))))))-)....)))))))))))---)..))....(((((((........))))))). ( -33.60, z-score = -2.56, R) >droSec1.super_17 1445420 108 - 1527944 ------GUUUACUCAAUCAAUCAGGCUUUCGGACUAAUACCAAUGGAUUUUACAGGGUGACUUUCC-AAUCAUGGUUGGUUGA---GCUGCGACAGUCGCUUUAGUAAGUGAGCGAUA ------((...((((((((((((.......((.......))..((((......(((....))))))-)....)))))))))))---)..))....(((((((........))))))). ( -31.00, z-score = -1.97, R) >droYak2.chrX 16227552 112 - 21770863 ------AAUUACUCAAUCUUUCAGGCUUUCUGGCUAAUCCAUAUAGAUUUUACAAGGUUAUUUUCAAAACCAUUAUUGGUUGAGUCGCUGUGACAGUCGCUUUAGUAAGUGAGCGAUA ------....((((((((.....((((....))))....................((((........))))......))))))))..........(((((((........))))))). ( -24.20, z-score = -1.02, R) >droEre2.scaffold_4690 7934906 109 - 18748788 ------GUUUACUCAAUCAAUCAGGUUUUCUGGCUAAUCACAAUGGAUUUUACAAGCUUAUUUUCAAAGUCAUUAUUGGUUGA---GCUGUGACAGUCGCUUAAGUAAGUGAGCAAUA ------(((((((.......((((.....))))............(((((((((.(((((...((((........)))).)))---))))))).)))).........))))))).... ( -20.70, z-score = -0.10, R) >consensus ______GUUUACUCAAUCAAUCAGGCUUUCAGGCUAAUACCAAUAGAUUUUACAAGGUGACUUUCAAAAUCAUGAUUGGUUGA___GCUGUGACAGUCGCUUUAGUAAGUGAGCGAUA ............(((((((((((((((....))))..........((((....(((....)))....)))).)))))))))))............(((((((........))))))). (-13.55 = -14.65 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:52 2011