Locus 15146

Sequence ID dm3.chrX
Location 17,593,399 – 17,593,511
Length 112
Max. P 0.920992
window20868 window20869

overview

Window 8

Location 17,593,399 – 17,593,511
Length 112
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 95.80
Shannon entropy 0.07152
G+C content 0.43364
Mean single sequence MFE -33.36
Consensus MFE -30.42
Energy contribution -30.26
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -2.09
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.28
SVM RNA-class probability 0.920992
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17593399 112 + 22422827
AGUUUAUCGGUGUUAGUUUUGCGAGUGUCUCAUGAUAUUUCGCAGAAUC------GCGGGAAUCGAGAAACUCCCCAAAACACAAAUAAACUCUUCCGGUGGACAGUGGGCAAAAUAA
(((((((..(((((.((((((((((((((....)))).)))))))))).------(.((((..........)))))..)))))..)))))))..((((.(....).))))........ ( -31.50, z-score =  -1.87, R)
>droEre2.scaffold_4690 7928547 118 + 18748788
AGUUUAUCGGUGUUAGUUUUGCGAGUGUCUCAUGAUAUUUCGCAGAAUCAGAAUCGCGGGAAUCGAGAAACUCCCCAAAACACAGAUAAACUCUUCCGGUGGACAGUGGGCAAAAUAA
((((((((.(((((.((((((((((((((....)))).)))))))))).......(.((((..........)))))..))))).))))))))..((((.(....).))))........ ( -34.10, z-score =  -2.01, R)
>droYak2.chrX 16221280 111 + 21770863
UGUUUAUCGGUGUUAGUUUUGCGAGUGUCUCAUGAUAUUUCGUAGAAUC------GCGGGAAUCGAGAAACUCCCCAAAACACAGAUAAACUCUUCCGGUGGACAGUGGGCAAAAUA-
.(((((((.(((((.((((((((((((((....)))).)))))))))).------(.((((..........)))))..))))).)))))))...((((.(....).)))).......- ( -31.60, z-score =  -1.66, R)
>droSec1.super_17 1439211 112 + 1527944
AGUUUAUCGGUGUUGGUUUUGCGAGUGUCUCAUGAUAUUUCGCAGAAUC------GCGGGAAUCGAGAAACUCCCCAAAACACAAAUAAACUCUUCCGGUGGACAGUGGGCAAAAUAA
(((((((..((((((((((((((((((((....)))).)))))))))))------(.((((..........)))))..)))))..)))))))..((((.(....).))))........ ( -34.80, z-score =  -2.46, R)
>droSim1.chrX 3655153 112 - 17042790
AGUUUAUCGGUGUUGGUUUUGCGAGUGUCUCAUGAUAUUUCGCAGAAUC------GCGGGAAUCGAGAAACUCCCCAAAACACAAAUAAACUCUUCCGGUGGACAGUGGGCAAAAUAA
(((((((..((((((((((((((((((((....)))).)))))))))))------(.((((..........)))))..)))))..)))))))..((((.(....).))))........ ( -34.80, z-score =  -2.46, R)
>consensus
AGUUUAUCGGUGUUAGUUUUGCGAGUGUCUCAUGAUAUUUCGCAGAAUC______GCGGGAAUCGAGAAACUCCCCAAAACACAAAUAAACUCUUCCGGUGGACAGUGGGCAAAAUAA
.(((((((((.(((.((((((((((((((....)))).)))))))))).......(.((((..........)))))............)))....))))))))).............. (-30.42 = -30.26 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 17,593,399 – 17,593,511
Length 112
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 95.80
Shannon entropy 0.07152
G+C content 0.43364
Mean single sequence MFE -28.02
Consensus MFE -24.80
Energy contribution -24.76
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.28
SVM RNA-class probability 0.624807
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17593399 112 - 22422827
UUAUUUUGCCCACUGUCCACCGGAAGAGUUUAUUUGUGUUUUGGGGAGUUUCUCGAUUCCCGC------GAUUCUGCGAAAUAUCAUGAGACACUCGCAAAACUAACACCGAUAAACU
....................(....)((((((((.(((((...(.((((.(((((((...(((------(....))))....)))..)))).)))).)......))))).)))))))) ( -27.90, z-score =  -1.65, R)
>droEre2.scaffold_4690 7928547 118 - 18748788
UUAUUUUGCCCACUGUCCACCGGAAGAGUUUAUCUGUGUUUUGGGGAGUUUCUCGAUUCCCGCGAUUCUGAUUCUGCGAAAUAUCAUGAGACACUCGCAAAACUAACACCGAUAAACU
....................(....)((((((((.(((((...(.((((.(((((((...(((((.......)).)))....)))..)))).)))).)......))))).)))))))) ( -29.60, z-score =  -1.66, R)
>droYak2.chrX 16221280 111 - 21770863
-UAUUUUGCCCACUGUCCACCGGAAGAGUUUAUCUGUGUUUUGGGGAGUUUCUCGAUUCCCGC------GAUUCUACGAAAUAUCAUGAGACACUCGCAAAACUAACACCGAUAAACA
-...................(....).(((((((.(((((..((((((((....)))))))((------((.(((..((....))...)))...))))....).))))).))))))). ( -28.20, z-score =  -1.99, R)
>droSec1.super_17 1439211 112 - 1527944
UUAUUUUGCCCACUGUCCACCGGAAGAGUUUAUUUGUGUUUUGGGGAGUUUCUCGAUUCCCGC------GAUUCUGCGAAAUAUCAUGAGACACUCGCAAAACCAACACCGAUAAACU
....................(....)((((((((.(((((...(.((((.(((((((...(((------(....))))....)))..)))).)))).)......))))).)))))))) ( -27.20, z-score =  -1.34, R)
>droSim1.chrX 3655153 112 + 17042790
UUAUUUUGCCCACUGUCCACCGGAAGAGUUUAUUUGUGUUUUGGGGAGUUUCUCGAUUCCCGC------GAUUCUGCGAAAUAUCAUGAGACACUCGCAAAACCAACACCGAUAAACU
....................(....)((((((((.(((((...(.((((.(((((((...(((------(....))))....)))..)))).)))).)......))))).)))))))) ( -27.20, z-score =  -1.34, R)
>consensus
UUAUUUUGCCCACUGUCCACCGGAAGAGUUUAUUUGUGUUUUGGGGAGUUUCUCGAUUCCCGC______GAUUCUGCGAAAUAUCAUGAGACACUCGCAAAACUAACACCGAUAAACU
....................(....).(((((((.(((((...(((((((....))))))).............(((((....((....))...))))).....))))).))))))). (-24.80 = -24.76 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:51 2011