| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,573,386 – 17,573,482 |
| Length | 96 |
| Max. P | 0.509509 |
| Location | 17,573,386 – 17,573,482 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 90.28 |
| Shannon entropy | 0.16387 |
| G+C content | 0.50514 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -26.80 |
| Energy contribution | -26.36 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17573386 96 + 22422827 UAUAUUGCCUUCACCUGGCCGAAUCCCAAA-GCCGAAUUUGAAUACCAACGAAAAUCGAUUGGAAACAGAAGGUUUUCCAGGUGCAGGAGGGCCUGG------ .............((.((((...(((((((-......))))..((((...(((((((..(((....)))..)))))))..))))..))).)))).))------ ( -28.20, z-score = -1.48, R) >droEre2.scaffold_4690 7909895 96 + 18748788 UUUAUUGCCUUCACCUGGCCGAAUCCCAAA-GCCGAAAUUGAAUUCCAACGAAACUCGGUUGGAAGCGGAGGGUUUCCCAGGUGCAGGAGGGCCUGG------ ......((((((((((((..(((.(((...-.(((........(((((((........))))))).))).))).)))))))))....))))))....------ ( -35.00, z-score = -1.29, R) >droYak2.chrX 16201377 103 + 21770863 UUUAUUGCCUUCACCUGGCCAAAUCCCAAAAGUCGAAUUUGAAUUCCAACGAAAAUCGACUGCAAGUAGAGGGUUUCCCAGGUGCAGGAGGGUCUGGGCCCGG .......(((.(((((((..(((((((...((((((.((((........))))..)))))).......).)))))).))))))).))).((((....)))).. ( -34.60, z-score = -1.62, R) >droSec1.super_17 1417714 96 + 1527944 UUUAUUGCCUUCACCUGGCCGAAUCCCAAA-GCCGAAUUUGAAUACCAACGAAAAUCGGUUGGAAACAGAGGGUUUUCCAGGUGCAGGAGGGCCUGG------ ......((((((((((((..(((((((..(-(((((.((((........))))..))))))(....).).)))))).))))))....))))))....------ ( -32.10, z-score = -1.56, R) >droSim1.chrX 3642545 96 - 17042790 UUUAUUGCCUUCACCUGGCCGAAUCCCAAA-GCCGAAUUUGAAUACCAACGAAAAUCGGUUGGAAACAGAGGGUUUUCCAGGUGCAGGAGGGCCUGG------ ......((((((((((((..(((((((..(-(((((.((((........))))..))))))(....).).)))))).))))))....))))))....------ ( -32.10, z-score = -1.56, R) >consensus UUUAUUGCCUUCACCUGGCCGAAUCCCAAA_GCCGAAUUUGAAUACCAACGAAAAUCGGUUGGAAACAGAGGGUUUUCCAGGUGCAGGAGGGCCUGG______ ......((((((((((((..(((((((....(((((.((((........))))..)))))((....))).)))))).))))))....)))))).......... (-26.80 = -26.36 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:47 2011