| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,564,628 – 17,564,721 |
| Length | 93 |
| Max. P | 0.868828 |
| Location | 17,564,628 – 17,564,721 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 76.86 |
| Shannon entropy | 0.37786 |
| G+C content | 0.41786 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -13.74 |
| Energy contribution | -14.02 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17564628 93 + 22422827 UUCAUCCCUGAUGAAAUUCAAAACCGUCAAGUAGCCACUGCGAUGGUAAAAAGAGUUACGAUCAAUUGCUUGCUUGAGCAUGCAUGCGUUACU ((((((...))))))..............((((((((.((((((.((((......)))).)))...(((((....))))).))))).)))))) ( -23.60, z-score = -1.81, R) >droSim1.chrX 3634258 89 - 17042790 GUCAUCCCUGAUGAAAUUCAAAACCGUCAAAUAGCCACUGCGAUGGUAAGAAGAGUUUCGAUCAAUUGCUGGCUUGAGCAUAC----GUUACU ........(((((((((((...((((((.............)))))).....))))))).))))..((((......))))...----...... ( -17.52, z-score = -0.06, R) >droSec1.super_17 1407616 79 + 1527944 GUCAUCCCUGAUGAAAUUCAAAACCGUCAAGUAGCCACUGCGAUGGUAAGAAGAGUUUCGAUCAAUUGCAUGCGUUACU-------------- ........(((((((((((...((((((.(((....)))..)))))).....))))))).))))...............-------------- ( -17.20, z-score = -1.10, R) >droYak2.chrX 16192064 74 + 21770863 CUCAUCCUUGAUGAAAUUCAAAACCGUCAAGUAACCACUGCGAUGGUAAAAAUAGUUUCGCUUA--AGUUUGUGCU----------------- ..((..((((((((((((....((((((.(((....)))..))))))......))))))).)))--))..))....----------------- ( -16.90, z-score = -2.76, R) >droEre2.scaffold_4690 7901172 76 + 18748788 GUCAUCCUUGAUGAAAUUCAAAACCGUCAGGUAACCACUGCGAUGGUAAAAAGAGUUUCGAUCAUUGGCUUGUGCG----------------- ((((....(((((((((((...((((((.(((....)))..)))))).....))))))).)))).)))).......----------------- ( -20.80, z-score = -2.16, R) >consensus GUCAUCCCUGAUGAAAUUCAAAACCGUCAAGUAGCCACUGCGAUGGUAAAAAGAGUUUCGAUCAAUUGCUUGCGUGA________________ ........(((((((((((...((((((.(((....)))..)))))).....)))))))).)))............................. (-13.74 = -14.02 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:46 2011