| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,561,834 – 17,561,930 |
| Length | 96 |
| Max. P | 0.905214 |
| Location | 17,561,834 – 17,561,930 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.56 |
| Shannon entropy | 0.38302 |
| G+C content | 0.28840 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -13.78 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17561834 96 - 22422827 AUGGCAAAGGGGACAACUGGACUAUGAUAUAGUUUUGUUGAAAAUAAACACUUAUUCAAUAAAUGUUGAAUGCCAUUAUAAUGUUGCAUUCAACAU----------- (((((........((((..((((((...))))))..)))).............(((((((....))))))))))))....((((((....))))))----------- ( -22.20, z-score = -2.29, R) >droEre2.scaffold_4690 7898312 103 - 18748788 AUGGCAAA--GGACAACUGGACUAUGAUAUAGUUUUGUUGAAAAUAAACACUCAAUUUGUUGGAGCUGUAUUCAAC--AAAUGUUGAAUUCUAUUUAUAUUUUGAUA ....((((--(..((((..((((((...))))))..))))...........(((((((((((((......))))))--))..)))))............)))))... ( -20.30, z-score = -1.38, R) >droYak2.chrX 16189191 103 - 21770863 AUGGCAAA--GGACAACAGGACUAUGAUACAGUAUUGUUGAAAAUAAACACAUAAAAUGUUUGAGCUGUAUUCAAC--AAAUGUUGAAUGCUAUUGUUAUAUUAAUA (((((((.--...((((((.(((.......))).))))))....((((((.......))))))....(((((((((--....)))))))))..)))))))....... ( -22.80, z-score = -2.20, R) >consensus AUGGCAAA__GGACAACUGGACUAUGAUAUAGUUUUGUUGAAAAUAAACACUUAAUAUGUUAGAGCUGUAUUCAAC__AAAUGUUGAAUUCUAUUU_UAU_UU_AUA .............((((.((((((.....)))))).))))...........................(((((((((......)))))))))................ (-13.78 = -14.23 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:45 2011