| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,554,171 – 17,554,261 |
| Length | 90 |
| Max. P | 0.541483 |
| Location | 17,554,171 – 17,554,261 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 92.99 |
| Shannon entropy | 0.11999 |
| G+C content | 0.41858 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -15.89 |
| Energy contribution | -15.73 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17554171 90 + 22422827 CAUGUAAAUGAGUGAUAGACAUACGUG----UGUCCCGUAAAACAAAAAGCUCGCCGAUGGAAAAAUGGAAACUGAAUGGGCCCAGCAUGAAUA (((((....((((((((.((....)).----))))..(.....).....))))(((.((........(....)...)).)))...))))).... ( -17.50, z-score = -0.74, R) >droSim1.chrX 3628141 94 - 17042790 CAUGUAAAUGAGUGAUAGACAUACGGGAGGGACACACGUAAAACAAAAAGCUCGUCGAUGGAAAAAUGGAAACUGAAUGGGCCCAGCAUGAAUA (((((..((((((........(((((........).)))).........))))))...(((......(....).........)))))))).... ( -14.89, z-score = 0.02, R) >droSec1.super_17 1396795 94 + 1527944 CAUGUAAAUGAGUGAUAGACAUACGGGAGGGACACACGUAAAACAAAAAGCUCGCCGAUGGAAAAAUGGAAACUGAAUGGGCCCAGCAUGAAUA (((((....((((........(((((........).)))).........))))(((.((........(....)...)).)))...))))).... ( -17.53, z-score = -0.87, R) >droYak2.chrX 16181523 89 + 21770863 CAUGUAAAUGAGUGAUAGACAUACGG-----ACACACGUAAAACAAAAAGCUCGCCGAUGGAAAAAUGGAAACUGAAUGGGCCCAGCAUGAAUA (((((....((((........((((.-----.....)))).........))))(((.((........(....)...)).)))...))))).... ( -18.23, z-score = -1.87, R) >droEre2.scaffold_4690 7890662 89 + 18748788 CAUGUAAAUGAGUAAUAGACAUACGA-----ACACACGUAAAACAAAAAGCUCGCCGAUGGAAAUAUGGAAACUGAAUGGGCCCAGCAUGAAUA (((((....((((........((((.-----.....)))).........))))(((.((........(....)...)).)))...))))).... ( -15.83, z-score = -1.39, R) >consensus CAUGUAAAUGAGUGAUAGACAUACGGG____ACACACGUAAAACAAAAAGCUCGCCGAUGGAAAAAUGGAAACUGAAUGGGCCCAGCAUGAAUA (((((....((((........((((...........)))).........))))(((.((........(....)...)).)))...))))).... (-15.89 = -15.73 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:44 2011