| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,553,969 – 17,554,084 |
| Length | 115 |
| Max. P | 0.721074 |
| Location | 17,553,969 – 17,554,084 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.14 |
| Shannon entropy | 0.45266 |
| G+C content | 0.38956 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -13.20 |
| Energy contribution | -14.57 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17553969 115 + 22422827 AAAAAAUAUGUCAAGUGGAAAAAGUACAGCCCAAGUACUUCGCCCAUUUUCAUUGCAACCUAAAA-GCUUGCAAAAGUGUGAAAAACGCUGCGAUGUGUGAAACCGAAUGAAUUUU--- ..........(((..(((.....((((.......))))(((((.((((....((((((.(.....-).)))))).(((((.....)))))..)))).))))).)))..))).....--- ( -24.30, z-score = -1.73, R) >droSim1.chrX 3627938 116 - 17042790 AAAUAAUAUAUCAAGUGGAAAAAGUACAGCCCAAGUACUUCGCCCAUUUUCAUUGCAGCCCAAAAAGCUUGCAAAAGUGUGAAAAACGCUGCGAUGUGUGAAACCGAAUGGAUUUU--- .....(((((((((((((...((((((.......))))))...)))))).....(((((.......((((....))))((.....))))))))))))))....((....)).....--- ( -27.10, z-score = -2.03, R) >droSec1.super_17 1396593 116 + 1527944 AAAUAAUAUAUCAAGUGGAAAAAGUACAGCCCAAGUACUUCGCCCAUUUUCAUUGCAACCCAAAAAGCUUGCAAAAGUGUGAAAAACUCUGCGAUGUGUGAAACCGAAUGGAUUUU--- .....(((((((((((((...((((((.......))))))...))))))...((((((.(......).)))))).((.((.....)).))..)))))))....((....)).....--- ( -21.40, z-score = -0.82, R) >droYak2.chrX 16181317 115 + 21770863 AAAAAAACUAUCAAGUGGAAAAAGUACAGCCCAAGUACUUCGCCCAUUUUCAUUGCAGUCCAAAA-GCUUGCAAAAGUGUGAAAAACGCUGCGAUGUGUGAAACCGAAUGGAUUUU--- .......(((((((((((...((((((.......))))))...)))))).(((((((((......-((((....))))((.....))))))))))).........).)))).....--- ( -25.10, z-score = -1.25, R) >droEre2.scaffold_4690 7890461 114 + 18748788 -AGAAAAAUAUCAAGUGGAAAAAGUACAACCCAAGUACUUCGCCCAUUUUCAUUGCAGCCCAAAA-GCUUGCAAAAGUGUGAAAAACGCUGCGAUGUGUGAAACCAAAUGGAUUCU--- -...........((((((...((((((.......))))))...)))))).(((((((((......-((((....))))((.....)))))))))))...(((.((....)).))).--- ( -28.30, z-score = -2.77, R) >dp4.chrXL_group1a 1531444 117 + 9151740 CUGUAGUAGACCGAGAGGCAGUUAAACA-UAUGAACAUACUAUGUAUUUUCAUUGCA-UCCAAAGUUCGAGCCCAACAUUCGAGCAUAACCCAUUUCGUUUAGUUAGCAGGUCUCUGGC ...(((.(((((((((((..((((..((-.(((((.((((...)))).)))))))..-......(((((((.......))))))).)))))).))))(((.....))).)))))))).. ( -26.10, z-score = -1.35, R) >consensus AAAAAAUAUAUCAAGUGGAAAAAGUACAGCCCAAGUACUUCGCCCAUUUUCAUUGCAGCCCAAAA_GCUUGCAAAAGUGUGAAAAACGCUGCGAUGUGUGAAACCGAAUGGAUUUU___ ..........(((..(((....(((((.......)))))((((.((((....((((((.(......).)))))).(((((.....)))))..)))).))))..)))..)))........ (-13.20 = -14.57 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:43 2011