| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,536,191 – 17,536,283 |
| Length | 92 |
| Max. P | 0.578325 |
| Location | 17,536,191 – 17,536,283 |
|---|---|
| Length | 92 |
| Sequences | 15 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 67.76 |
| Shannon entropy | 0.71305 |
| G+C content | 0.45249 |
| Mean single sequence MFE | -26.69 |
| Consensus MFE | -8.16 |
| Energy contribution | -7.93 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17536191 92 + 22422827 CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUGACGGGAAUGUCGAGCGCAUCAAUCUCAGUAUUGGUAUCUGCAUUUGAAAA--------------- (((((((........((((((((((((((....)))))))))).))))...)))))))..((((...(((.........)))...))))...--------------- ( -31.60, z-score = -1.92, R) >droSim1.chrX 3609178 92 - 17042790 CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUGACGGGAAUGUCGAGCGCAUCAAUCUCAGUAUUGGUAUCUGCAUUUGAAAA--------------- (((((((........((((((((((((((....)))))))))).))))...)))))))..((((...(((.........)))...))))...--------------- ( -31.60, z-score = -1.92, R) >droSec1.super_17 1379016 92 + 1527944 CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUGACGGGAAUGUCGAGCGCAUCAAUCUCAGUAUUGGUAUCUGCAUUUGAAAA--------------- (((((((........((((((((((((((....)))))))))).))))...)))))))..((((...(((.........)))...))))...--------------- ( -31.60, z-score = -1.92, R) >droYak2.chrX 16163328 92 + 21770863 CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUGACGGGAAUAUCCAGCGCAUCAAUCUCAGUAUUGGUAUCUGGAUUGCAAGA--------------- ((((.(((.......((((((((((((((....)))))))))).))))...)))))))...(((((.(((.........)))))))).....--------------- ( -34.50, z-score = -2.63, R) >droEre2.scaffold_4690 7872645 92 + 18748788 CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUCACGGGUAUGUCCAGCGCAUCAAUCUCAGUAUUGGUAUCUGGAUUUGAAAA--------------- .(((((((((((.....)))).(((((((....))))))))).)))))..((((((...((((((......))))))..)))))).......--------------- ( -28.00, z-score = -1.06, R) >droAna3.scaffold_13335 2180924 103 + 3335858 CGCUUGGAGAAGAAGUCCUUGAGGGCGGUGGCCACAGCAUUAACCGGAAUAUCCAAAGCAUCUAUCUCGGUGUUGGCAUCUAAAUAGAUAGAUAAAUAAAUAA---- .(((((((......((((....))))(((.((....))....)))......))).))))((((((((.((((....)))).....))))))))..........---- ( -28.10, z-score = -1.69, R) >dp4.chrXL_group1a 1513774 106 + 9151740 CGUUUCGAGAAGAAGUCCUUCAGCGCCGUAGCAACGGCAUUGACGGGUAUGUCCAGAACAUCGAUGACGGUGUUGACAUCUGAAUUGGCAUGAAAAAAAUUAAAAA- (((.((((..(((..(((.((((.(((((....))))).)))).)))..((((...(((((((....))))))))))))))...)))).)))..............- ( -29.00, z-score = -1.37, R) >droPer1.super_53 236533 106 - 525408 CGUUUCGAGAAGAAGUCCUUCAGCGCCGUAGCAACGGCAUUGACGGGUAUGUCCAGAACAUCGAUGACGGUGUUGACAUCUGAAUUGGCAUGAAAAAAAUUAAAAA- (((.((((..(((..(((.((((.(((((....))))).)))).)))..((((...(((((((....))))))))))))))...)))).)))..............- ( -29.00, z-score = -1.37, R) >droWil1.scaffold_180777 2101094 89 + 4753960 CGUUUCGAAAAGAAAUCCUUAAGUGCUGUAGCCACAGCAUUCACCGGUAUAUCCAGCACAUCAAUUACAGUAUUAGGAUCUAUCGUAUA------------------ .(((((.....))))).....((((((((....))))))))...(((((.((((((.((..........)).)).)))).)))))....------------------ ( -17.60, z-score = -1.96, R) >droVir3.scaffold_13042 896685 103 - 5191987 CGUUUCGAGAAGAAGUCCUUCAGCGCGGUGGCCACCGCAUUCACCGGAAUGUCCAGCACAUCAAUAACCGUAUUGGUAUCUAUU--CAGGCAAUUUUGAAAAUGA-- (((((((.((((.....))))...(((((....)))))......)))))))........(((((((....))))))).....((--((((....)))))).....-- ( -23.60, z-score = -0.08, R) >droMoj3.scaffold_6359 2130159 92 + 4525533 CGCUUCGAAAAGAAGUCCUUGAGCGCGGUGGCCACCGCAUUUACUGGUAUAUCCAGCACAUCAAUAAUUGUAUUGGUAUCUAACACCAAGAA--------------- .(((((.....))))).((((.(((((((....)))))......(((.....)))))..(((((((....))))))).........))))..--------------- ( -24.40, z-score = -1.86, R) >droGri2.scaffold_14853 2989930 93 - 10151454 CGUUUCGAGAAGAAAUCCUUCAAUGCGGUAGCAACCGCAUUCACUGGAAUAUCCAGCACGUCAAUAAUUGUAUUGGUAUCUAUAAGAAUA-UAA------------- (((.....((((.....))))((((((((....))))))))..((((.....)))).)))((((((....))))))..............-...------------- ( -20.30, z-score = -1.71, R) >anoGam1.chrX 16248163 107 + 22145176 CGCUUCACGAAGAAGUCCUUCAGUGCGGUGGCGACCGCAUUCACCGGUAUGUCCAGCUUUUCUAUAUCUACAUCCGAUUCUGUAACAUUGGUGAGUGCACGGGAGAA ((((.(((((((.....)))).))).)))).(..(((((((((((((((((...........))))))((((........)))).....)))))))))..))..).. ( -30.70, z-score = -0.49, R) >apiMel3.Group1 17327616 107 + 25854376 CUUUUUGAGAAGAAAUCUUUCAAAGCAGUUGCAACAGCAUUUACUGGUAUAUCCAACGAAUGUAUGUCCACAUUUCCGUCUGCAAUAAUAAAACAUGAAAUAAUGAA ..((((((((.(....)))))))))..((((((((.((((((..(((.....)))..))))))(((....)))....)).)))))).......(((......))).. ( -18.10, z-score = -0.59, R) >triCas2.ChLG1X 3200036 89 + 8109244 CUCUUGGAAACGAAGUCUUUCAAAGCCGUAGCGACAGCAUUCACGGGAAUAUCGAGCUCGUGAAUAUCAACAUUCGGGUCUGGAAAAAA------------------ ...(((....)))....(((((.(.(((..((....))(((((((((.........))))))))).........))).).)))))....------------------ ( -22.20, z-score = -1.11, R) >consensus CGCUUCGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUCACGGGAAUGUCCAGCGCAUCAAUCUCAGUAUUGGUAUCUGAAUUAAAAAA_______________ ..........(((...........(((((....)))))......................(((((......)))))..))).......................... ( -8.16 = -7.93 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:37 2011