Locus 15131

Sequence ID dm3.chrX
Location 17,527,824 – 17,527,934
Length 110
Max. P 0.852531
window20849

overview

Window 9

Location 17,527,824 – 17,527,934
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 96.97
Shannon entropy 0.04174
G+C content 0.32727
Mean single sequence MFE -26.27
Consensus MFE -23.22
Energy contribution -23.33
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.15
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.92
SVM RNA-class probability 0.852531
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17527824 110 + 22422827
AAUUAUAAUGUUCGCUCAUUAUAAUUGUAUGUACAAUGGCGUACGUACGUAAGAACGAAUAUUAUGAAUUAAGAUGAUUGGAAGAGUAGUUGAGAGGCUAUUUUCAGCUG
..((((((((((((.((.((((....((((((((......)))))))))))))).))))))))))))..........((((((..((((((....))))))))))))... ( -31.00, z-score =  -3.61, R)
>droSim1.chrX 3600516 110 - 17042790
AAUAAUAAUGUUCGCUUAUUAUAAUUGAAUGUACACUGGCGUACGUACGUAUGAACGAAUAUUAUGAAUUAAGAUGAUUGGAAGAGUAGUUGAGAGGCUAUUUUCAGCUG
....((((((((((.((((......((.((((((......)))))).)).)))).))))))))))............((((((..((((((....))))))))))))... ( -23.90, z-score =  -1.42, R)
>droSec1.super_17 1370597 110 + 1527944
AAUAAUAAUGUUCGCUUAUUAUAAUUGAAUGUACACUGGCGUACGUACGUAUGAACGAAUAUUAUGAAUUAAGAUGAUUGGAAGAGUAGUUGAGAGGCUAUUUUCAGCUG
....((((((((((.((((......((.((((((......)))))).)).)))).))))))))))............((((((..((((((....))))))))))))... ( -23.90, z-score =  -1.42, R)
>consensus
AAUAAUAAUGUUCGCUUAUUAUAAUUGAAUGUACACUGGCGUACGUACGUAUGAACGAAUAUUAUGAAUUAAGAUGAUUGGAAGAGUAGUUGAGAGGCUAUUUUCAGCUG
....((((((((((.((((......((.((((((......)))))).)).)))).)))))))))).....................((((((((((....)))))))))) (-23.22 = -23.33 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:35 2011