| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,527,067 – 17,527,162 |
| Length | 95 |
| Max. P | 0.660690 |
| Location | 17,527,067 – 17,527,162 |
|---|---|
| Length | 95 |
| Sequences | 14 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.49 |
| Shannon entropy | 0.49203 |
| G+C content | 0.51238 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -13.00 |
| Energy contribution | -13.24 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17527067 95 - 22422827 ---------------------UUAGCAAUUAGAAUUGCUUACAUAGUAGUCAUCGUUGAUCGCCACCAUUGGCGCAUUGACACAGGCGCCCAAGCACUCGACCUCCGAGAUGGUGA ---------------------..((((((....))))))......(..((((....))))..)((((((.(((((.(((...))))))))......((((.....)))))))))). ( -28.60, z-score = -2.14, R) >droSim1.chrX 3599731 89 + 17042790 ---------------------------GCUAGAAUUGCUUACAUAGUAGUCAUCGUUGAUCGCUACCAUUGGCGCAUUGACACAGGCGCCCAAGCACUCGACCUCCGAGAUGGUGA ---------------------------((((....(((((...(((..((((....))))..))).....(((((.(((...)))))))).)))))((((.....)))).)))).. ( -26.00, z-score = -1.16, R) >droSec1.super_17 1369817 89 - 1527944 ---------------------------GCUAGAAUUGCUUACAUAGUAGUCAUCGUUGAUCGCCACCAUUGGCGCAUUGACACAGGCGCCCAAGCACUCGACCUCCGAGAUGGUGA ---------------------------((.......)).......(..((((....))))..)((((((.(((((.(((...))))))))......((((.....)))))))))). ( -25.20, z-score = -0.91, R) >droYak2.chrX 16154062 95 - 21770863 ---------------------UUUGCAGCUAGAAUUGCUUACAUAGUAGUCAUCGUUGAUCGCCACCAUUGGCGCAUUGACACAGGCGCCCAGGCACUCGACCUCCGAGAUGGUGA ---------------------....((((.(..((((((.....))))))..).)))).((((((((...(((((.(((...))))))))..))..((((.....)))).)))))) ( -28.40, z-score = -0.92, R) >droEre2.scaffold_4690 7863295 95 - 18748788 ---------------------UUUGCAGCUAGAAUUGCUUACAUAGUAGUCAUCGUUGAUCGCCACCAUUGGCGCAUUGACACAGGCGCCCAAGCACUCGACCUCCGAGAUGGUGA ---------------------....((((.(..((((((.....))))))..).)))).....((((((.(((((.(((...))))))))......((((.....)))))))))). ( -27.70, z-score = -1.12, R) >droAna3.scaffold_13248 3013752 116 + 4840945 UUUGGCCAUCUAUCAGAGAAUCCCCAAAACCAUAAAUCUUACAUAGUAAUCGUCGUUGACGGACACCAUGGGGGCGUUUACACAGGCGCCCAGGCACUCCACCUCCGAGAUGGUGA ....(((((((....(((...........((((.....((((...))))(((((...))))).....))))((((((((....))))))))...........)))..))))))).. ( -31.70, z-score = -0.57, R) >dp4.chrXL_group1e 8075262 79 + 12523060 -------------------------------------CUUACAUAGUAAUCAUCGUUGACCGCCACCAUGGGUGCAUUGACGCAUGCACCCAGGCACUCCACCUCGGAGAUGGUGA -------------------------------------............(((((((.....(((....(((((((((......)))))))))))).((((.....))))))))))) ( -29.60, z-score = -2.73, R) >droPer1.super_17 540460 79 + 1930428 -------------------------------------CUUACAUAGUAAUCAUCGUUGACCGCCACCAUGGGUGCAUUGACGCAUGCACCCAGGCACUCCACCUCGGAGAUGGUGA -------------------------------------............(((((((.....(((....(((((((((......)))))))))))).((((.....))))))))))) ( -29.60, z-score = -2.73, R) >droWil1.scaffold_181096 4122420 87 + 12416693 -----------------------------UCAUCAUACGCACAUAAUAGUCAUCAUUCACCGCCACCAUAGGGGCAUUGACACAGGCACCCAAGCACUCCACCUCGGAGAUCGUGA -----------------------------..........(((......(((.....(((..(((.((...)))))..)))....))).........((((.....))))...))). ( -16.80, z-score = -0.49, R) >droVir3.scaffold_12726 1045390 83 - 2840439 ---------------------------------CAUACUCACAUAGUAGUCAUCAUUGAUGGACACCAUCGGCGCAUUGACGCAGGCGCCCAGACACUCCACCUCGGAGAUGGUAA ---------------------------------..((((.........(((......(((((...)))))(((((.(((...))))))))..))).((((.....))))..)))). ( -24.30, z-score = -1.63, R) >droMoj3.scaffold_6473 7824977 83 + 16943266 ---------------------------------CCCCCUCACAUAGUAAUCAUCGUUGAUGGACACCAUGGGCGCAUUGACACAGGCGCCCAAGCAUUCCACCUCGGAGAUGGUGA ---------------------------------................(((((...))))).((((((((((((.(((...))))))))).....((((.....)))))))))). ( -26.00, z-score = -1.05, R) >droGri2.scaffold_14853 9997414 83 - 10151454 ---------------------------------ACUACUUACAUAGUAGUCAUCAUUGAUGGACACCAUCGGCGCAUUGACGCAGGCGCCCAGACACUCAACCUCAGAUAUGGUGA ---------------------------------.(((((.....)))))(((((((.(((((...)))))(((((.(((...))))))))...................))))))) ( -23.30, z-score = -1.80, R) >anoGam1.chr2R 45891930 79 + 62725911 -------------------------------------CUUACAUAGUAAUCAUCGUUGACUGCCAGCAUCGGGGCGUUUACGCAUGCACCGAGACAUUCCACUUCAGAGAUGGUAA -------------------------------------...........((((((((((.....)))).((((.((((......)))).))))................)))))).. ( -18.60, z-score = -0.65, R) >triCas2.ChLG3 13753905 79 - 32080666 -------------------------------------CUUACAUAAUAAUCAUCAUUAACUUGAAUCAUGGGGGCAUUCACGCACGCCCCGAGACACUCAACUUCAGAAAGUGUAA -------------------------------------..(((((........(((......))).((...(((((..........)))))(((...))).......))..))))). ( -15.30, z-score = -1.58, R) >consensus _________________________________AUUGCUUACAUAGUAGUCAUCGUUGAUCGCCACCAUGGGCGCAUUGACACAGGCGCCCAGGCACUCCACCUCCGAGAUGGUGA ................................................................(((((.(((((..........)))))......((((.....))))))))).. (-13.00 = -13.24 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:34 2011