| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,524,224 – 17,524,333 |
| Length | 109 |
| Max. P | 0.511570 |
| Location | 17,524,224 – 17,524,333 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 64.20 |
| Shannon entropy | 0.65718 |
| G+C content | 0.50904 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -15.23 |
| Energy contribution | -13.80 |
| Covariance contribution | -1.43 |
| Combinations/Pair | 1.68 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17524224 109 + 22422827 ------GUGGACGACGGAUGCUUAAAGUAAUCCGGCAUUGGUUGGCUCAUUGGGAACUCCUCCUCCUC----CAAUUUUAGUCGCUUGCAAGGCGGCGCCUCGUUUUCAUCGCGAUUGC ------(..(((((.((((((.....)).))))((((((((..((......((((.....)))))).)----))))....((((((.....))))))))))))))..)........... ( -31.60, z-score = 0.07, R) >droAna3.scaffold_13248 3010055 109 - 4840945 GCAAAAUCGGAUGACGAGAAGUUCAGGAAGG--AGCUCUGGCUGGAAUCUGAGAUACUUAGUUCAUGGGGAACAGCUUGGGCCAUCGGGAACAUGAAA--UCGUCCAUAUCAA------ ........((((((......((((..((..(--.((((.(((((...((((.((........)).))))...))))).))))).))..))))......--)))))).......------ ( -29.70, z-score = -0.53, R) >droYak2.chrX 16151014 109 + 21770863 ------GUGGACGACGGUUGCUUGUAAAAAUCCGGCAUAGGUUGGGCCAUUGGGAACUCAUCCUCAUC----CAGUUUGAGUCGCUUUUUGGGCGGUGCCUCGUUUCCGUCAAUAUAAA ------(..(((((.((((((.........((((((....))))))(((..(((.(((((..((....----.))..)))))..)))..))))))..))))))))..)........... ( -29.80, z-score = 0.28, R) >droEre2.scaffold_4690 7860171 103 + 18748788 ------GUAGGCGUCGGAUUAUUGAGGAACUCCGGCAUAGGUUGGGCCAUUGGGAAUUCAUCCUCAUC----CAGUUUCAGUCGCUUGCUAGGCGGUGGCUCAUUAAAAUAAA------ ------(((((((.(.((((..((((((..((((((....))))))((....))......))))))..----.))))...).)))))))..(((....)))............------ ( -27.10, z-score = 0.19, R) >droSec1.super_17 1366840 109 + 1527944 ------GUGGAGGACGGAUGCUUAAAGUAAUCCGGCAUUGGUUGGGUCAUUGGGAACUCAUCCUCCUC----CAAUUUUAGUCGCUUGCUAGGCGACUCCUCGUUUGCAUCGCGAUCGC ------.(((((((.(((((.((..(((.(((((((....))))))).)))..))...))))))))))----))......(((((.(((.((((((....)))))))))..)))))... ( -41.00, z-score = -2.75, R) >droSim1.chrX 3596759 109 - 17042790 ------GUGGAGGACGGAUGCUUAAAGUAAUCCGGCAUUGGUUGGGUCAUUGGGAACUCAUCCUCCUC----CGAUUUUAGUCGCUUGCUAGGCGGCUCCUCGUUUGCAUCGCGAUCGC ------.(((((((.(((((.((..(((.(((((((....))))))).)))..))...))))))))))----))......(((((.(((.((((((....)))))))))..)))))... ( -39.40, z-score = -1.61, R) >consensus ______GUGGACGACGGAUGCUUAAAGAAAUCCGGCAUUGGUUGGGUCAUUGGGAACUCAUCCUCCUC____CAAUUUUAGUCGCUUGCUAGGCGGCGCCUCGUUUACAUCAAGAU_GC ............(((((.....(((((....(((((....)))))......((((.....))))...........)))))((((((.....))))))...))))).............. (-15.23 = -13.80 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:33 2011