| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,524,019 – 17,524,124 |
| Length | 105 |
| Max. P | 0.528986 |
| Location | 17,524,019 – 17,524,124 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.81 |
| Shannon entropy | 0.29620 |
| G+C content | 0.31451 |
| Mean single sequence MFE | -18.66 |
| Consensus MFE | -11.70 |
| Energy contribution | -12.06 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17524019 105 - 22422827 CCUACUGCCGCCUCGGCGUACAUACUUUAAAUUGUUAACGUAUUUUGGUCAAAAAUUAAUGUAUGUUCUUUAUAAGAACGGACAAUUAAUUAAUAUCCAGAUACU ..(((.((((...)))))))...................((((((.((.....(((((((((.((((((.....)))))).)).))))))).....)))))))). ( -21.40, z-score = -2.15, R) >droYak2.chrX 16150819 95 - 21770863 ---CCUGCUGGCUCGUCA-------UUUAAACUGUAAACGAAUUUCGAUCAAAAAUUAAUGUGUGUUCUUGAUAAGAACGGACAAUUAAUUUACAUACAGCUAUU ---...(((((.(((..(-------(((...........))))..))).)..((((((((((.((((((.....)))))).)).)))))))).....)))).... ( -19.50, z-score = -2.16, R) >droEre2.scaffold_4690 7859969 102 - 18748788 ---CCUGCUGGCUCUUCAUACAUACUUUAAAUUAUAAACGUAUUUUGAUCAAACAUUAAUGUUUGUUCUUGAUAAGAACGAACAAUUAAUUUACAUCCAGCUUUA ---...(((((....(((...((((((((.....)))).))))..)))......(((((((((((((((.....))))))))).))))))......))))).... ( -22.10, z-score = -4.33, R) >droSec1.super_17 1366635 105 - 1527944 CCUACUGCCGCCUCAGCGUACAUACUUUAAAUUGAUAACGUAUUUUGGUCAAAAAUUAAUGUGUGUUCUUGAUAAUAACGUACAAUUAAUUUAUAUCCAGAUACU ........(((....))).....................((((((.((....(((((((((((((((.........))))))).))))))))....)))))))). ( -14.80, z-score = -0.22, R) >droSim1.chrX 3596554 105 + 17042790 CCUACUGCCGCCUCAGCGUACAUACUUUAAAUUGAUAACGUAUUUUGGUCAAAAAUUAAUGUGUGUUCUUGAUAAUAACGGACAAUUAAUUUAUAUCCAGAUACU ........(((....))).....................((((((.((....((((((((((.((((.........)))).)).))))))))....)))))))). ( -15.50, z-score = -0.19, R) >consensus CCUACUGCCGCCUCAGCGUACAUACUUUAAAUUGUUAACGUAUUUUGGUCAAAAAUUAAUGUGUGUUCUUGAUAAGAACGGACAAUUAAUUUAUAUCCAGAUACU ........(((....))).....................((((((.(((...((((((((((.((((((.....)))))).)).))))))))..))).)))))). (-11.70 = -12.06 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:32 2011