| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,522,779 – 17,522,874 |
| Length | 95 |
| Max. P | 0.917558 |
| Location | 17,522,779 – 17,522,874 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.68 |
| Shannon entropy | 0.42858 |
| G+C content | 0.51903 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -16.67 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17522779 95 - 22422827 AAGGUUCAAGUCGUACACAAGC-CCAUGGAUGCGAAGACCAGUCGCGAAUUGGUGAAGAGGGCCUACAAGGAGGCCCAGCAAGAG-GUUGAUACCGA-------------- ..(((((...(((((..((...-...))..))))).((((..((((......))))...((((((......)))))).......)-))))).)))..-------------- ( -30.00, z-score = -1.84, R) >droSim1.chrX 3595314 95 + 17042790 AAGGUUCAAGUCGUACACAAGC-CCAUGGAUGCGAAGACCAGUCGCGAAUUGGUGAAGAGGGCCUACAAGGAGGCCCAGCAAGAG-GUUGAUACCGA-------------- ..(((((...(((((..((...-...))..))))).((((..((((......))))...((((((......)))))).......)-))))).)))..-------------- ( -30.00, z-score = -1.84, R) >droSec1.super_17 1365419 95 - 1527944 AAAGUUCAAGUCGUACACAAGC-CCAUGGAUGCGAAGACCAGUCGCGAAUUGGUGAAGAGGGCCUACAAGGAGGCCCAGCAAGAG-GUUGAUACCGA-------------- ....(((...(((((..((...-...))..)))))..((((((.....)))))))))..((((((......)))))).......(-((....)))..-------------- ( -26.70, z-score = -1.18, R) >droEre2.scaffold_4690 7858711 95 - 18748788 AAGGUUCCAAUCGUGCACAAGC-CCAUGGAUGCGAAAACCAGUCGCGAAUUGGUCAAGAGGGCCUACAAGGAAGCCCAGCAAGAG-GUUGAUACCGA-------------- ..(((..(((((.(((....(.-(((....(((((.......)))))...))).)....((((..........)))).)))...)-))))..)))..-------------- ( -27.80, z-score = -1.13, R) >droYak2.chrX 16149612 95 - 21770863 AAGGUUCAAAUCGUCCACAAAC-CCAUGGAUGCGAAAACCAGUCGCGAACUGGUUAAGAGGGCCUACAAGGAGGCCCAGCAAGAG-GUUGAGACCGA-------------- ..((((..(((((((((.....-...)))))((...(((((((.....)))))))....((((((......)))))).))....)-)))..))))..-------------- ( -35.50, z-score = -3.48, R) >droWil1.scaffold_181096 10191792 104 - 12416693 -------AAGCUAGAGAAACCCUCUAUGGAUGAGAAGACCAGAAAGGAGCUGGUCAAGCAAGCCAUUCGAGAGGUUAAACAGGAACAGCGAAAUGGCAUAAAAGAUCCGGA -------....(((((.....)))))(((((.....((((((.......))))))......((((((((....(((.......)))..)).)))))).......))))).. ( -28.90, z-score = -2.61, R) >consensus AAGGUUCAAGUCGUACACAAGC_CCAUGGAUGCGAAGACCAGUCGCGAAUUGGUGAAGAGGGCCUACAAGGAGGCCCAGCAAGAG_GUUGAUACCGA______________ ..............................(((....((((((.....)))))).....((((((......)))))).))).............................. (-16.67 = -16.87 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:31 2011