| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,514,320 – 17,514,440 |
| Length | 120 |
| Max. P | 0.764092 |
| Location | 17,514,320 – 17,514,440 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.92 |
| Shannon entropy | 0.24784 |
| G+C content | 0.45333 |
| Mean single sequence MFE | -30.49 |
| Consensus MFE | -22.46 |
| Energy contribution | -22.34 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17514320 120 + 22422827 UCGGCCCAUUGCAGAUUCACUUUCGAGCUCCAGGCUUUUCAAACACUUGAGGCUCGGAACACUGGGUCAGGACGUUUCACAUCCUUUUCUAGCCGGCUAUUUUCUAUGCUUUUUCAAAUC (((((........((((((.((((((((..((((...........))))..))))))))...))))))((((.(.....).))))......)))))........................ ( -30.50, z-score = -1.73, R) >droSim1.chrX_random 4503384 120 + 5698898 UCGGCCCAAUGCAGAUUCACUUUCGAGCUCCAGGCUUUUCAAACACUUGAGGCUCGGAACACUGGGCCAGGACGUUUCACGUCCUUUUGUAGCCGGUUAUUUUCUACAUUUUUUUCAAUC ..((((((.((.........((((((((..((((...........))))..)))))))))).))))))((((((.....))))))..(((((...........)))))............ ( -37.90, z-score = -3.93, R) >droSec1.super_17 1357171 120 + 1527944 UCGGCCCAAUGCAGAUUCACUUUCGAGCUCCAGGCUUUUCAAACACUUGAGGCUCGGAACACUGGGCCAGGAUGUUUCACGUCCUUUUGUAGCCGCUUAUUUUCUACAUUUUUUUCAAUC ..((((((.((.........((((((((..((((...........))))..)))))))))).))))))((((((.....))))))..(((((...........)))))............ ( -36.10, z-score = -3.48, R) >droYak2.chrX 16141766 120 + 21770863 UCGGCCAAUUGCAGAUUCACUUUCAAGCUCCAGGCUCUUCAAACACUCGAGUUUCGGGACACUGGGCCAAGUUGAUUCACAUCCUUUUCAAGCCGAUUAAUUUGUGCAGUUUUUUAAAUC ......(((((((.............((.((((..(((..((((......))))..)))..))))))((((((((((.................)))))))))))))))))......... ( -25.03, z-score = -0.27, R) >droEre2.scaffold_4690 7850973 120 + 18748788 UCGGCCAAUUGCAGAUUCACUUUCGGGCUCCAGGCUCUUCAAACACUUGAGUUUCGGCACACUGGGUCAAGUUGUUUCGCAGCUUUUUUAAGCCGCUUAUUUUCUCACUUUUUUCAAAUC ..((((....((.((.......))..))....))))....((((((((((..(((((....)))))))))).))))).((.((((....)))).))........................ ( -22.90, z-score = -0.03, R) >consensus UCGGCCCAUUGCAGAUUCACUUUCGAGCUCCAGGCUUUUCAAACACUUGAGGCUCGGAACACUGGGCCAGGAUGUUUCACAUCCUUUUCUAGCCGCUUAUUUUCUACAUUUUUUUAAAUC ..((((((.((.........((((((((((.((............)).))).))))))))).))))))((((((.....))))))................................... (-22.46 = -22.34 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:30 2011