Locus 15125

Sequence ID dm3.chrX
Location 17,506,345 – 17,506,408
Length 63
Max. P 0.993548
window20843

overview

Window 3

Location 17,506,345 – 17,506,408
Length 63
Sequences 4
Columns 63
Reading direction reverse
Mean pairwise identity 87.04
Shannon entropy 0.21503
G+C content 0.51792
Mean single sequence MFE -13.30
Consensus MFE -12.38
Energy contribution -12.50
Covariance contribution 0.13
Combinations/Pair 1.07
Mean z-score -2.58
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.62
SVM RNA-class probability 0.993548
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17506345 63 - 22422827
ACCAGAGCGGCUAAUCUUCCUCUCCAUUUCUACUUUUCCACUUGGCAUUGGCCGUCUCUUUCG
...((((((((((((...((.......................)).)))))))).)))).... ( -14.80, z-score =  -3.67, R)
>droEre2.scaffold_4690 7843170 62 - 18748788
ACCAGAGCGGCUAAUCUCCUUCUCCUUUUCUCCUCUUCC-UGCAACAUGGGCCGUCUCUUUCU
...(((((((((...........................-.........))))).)))).... ( -10.02, z-score =  -0.77, R)
>droSec1.super_17 1349411 63 - 1527944
ACCAGAGCGGCUAAUUUUCCUCUCCUUUUCUACGCUUCCACUCGGCAUUGGCCGUCUCUUUCG
...((((((((((((...((.......................)).)))))))).)))).... ( -14.20, z-score =  -2.61, R)
>droSim1.chrX_random 4494558 63 - 5698898
ACCAGAGCGGCUAAUCUUCCUCUCCUUUUCUACACUUCCACCCGGCAUUGGCCGUCUCUUUCG
...((((((((((((...((.......................)).)))))))).)))).... ( -14.20, z-score =  -3.27, R)
>consensus
ACCAGAGCGGCUAAUCUUCCUCUCCUUUUCUACUCUUCCACUCGGCAUUGGCCGUCUCUUUCG
...((((((((((((...((.......................)).)))))))).)))).... (-12.38 = -12.50 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:29 2011