| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,490,025 – 17,490,137 |
| Length | 112 |
| Max. P | 0.982870 |
| Location | 17,490,025 – 17,490,137 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 74.50 |
| Shannon entropy | 0.49316 |
| G+C content | 0.47090 |
| Mean single sequence MFE | -34.82 |
| Consensus MFE | -20.57 |
| Energy contribution | -24.13 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.982870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17490025 112 - 22422827 -ACUUCGAGCCUCUCGUGCUGUCUCUUAAUUGUUUAGCCGCUUUGUUCUGGCCAACUGGCAAUACAAAUAAAGCCAGGAAACUGGAAAUGAAUGGGUUCGAAGAAGCGGUGCC- -.((((((((((.((((((((...(......)..)))).((((((((...(((....)))......))))))))(((....)))...))))..))))))))))..........- ( -36.30, z-score = -2.26, R) >droPer1.super_13 866352 111 - 2293547 CCUAUCCAGCAUGGCCUGU--GUGCUUCAGUGUUGUGUAAUGCC-CCCCGUACAAAGAACAGUGGUGUUAAGUCCCAAAGAUUACUGAAUAUUUAGGCCUUCAUUUCUUCGUUU ............((((((.--(((.((((((......(((((((-.(..((.......)).).)))))))((((.....))))))))))))).))))))............... ( -22.60, z-score = -0.51, R) >droSim1.chrX 3579467 112 + 17042790 -ACUUCGAGCCUCUCGUGCUGGCUCUUAAUUGUUUUGCCGCUUUGUUCUGGCCAACUGGCAAUACAAAUAAAGCCAGGAAACUGGAAAUGAAUGGGUUCGAAGCAGCGAUGCC- -.((((((((((.((((((.(((.............)))))(((((....(((....)))...))))).....((((....))))..))))..))))))))))..........- ( -37.92, z-score = -2.38, R) >droSec1.super_17 1332848 112 - 1527944 -ACUUCGAGCCUCUCGUGCUGGCUCUUAAUUGUUUUGCCGCUUUGUUCUGGCCAACUGGCAAUACAAAUAAAGCCAGGAAACUGGAAAUGAAUGGGUUCGAAGGAGCGAUGCC- -.((((((((((.((((((.(((.............)))))(((((....(((....)))...))))).....((((....))))..))))..))))))))))..........- ( -38.82, z-score = -2.66, R) >droYak2.chrX 16117648 112 - 21770863 -ACUUCGAGCCUCUCGUGCUUGCUCUUAAUUGUUUUGCCGCUUUGUUCUGGCCAACUGGCAAUACAAAUAAAGCCAGGAAACUGCCAGCAAAUGGGUUCGAAGCUGUGAUGCU- -.((((((((((....((((.(((.(((.((((.((((((.((.((....)).)).)))))).)))).))))))(((....)))..))))...))))))))))..........- ( -38.50, z-score = -2.76, R) >droEre2.scaffold_4690 7827612 112 - 18748788 -ACUUUGAGCCUCUCGUGCUUGCUCUUAAUUGUUUUGCCCCUUUGUUCUGGCCAACUGGCAAUACAAAUAAGGCCAGGAAACUGCAAAUGAAUGGGUUCGAAGCUGCGCUGCU- -.((((((((((.((((....((.((((.((((.(((((..((.((....)).))..))))).)))).))))))(((....)))...))))..))))))))))..........- ( -34.80, z-score = -1.70, R) >consensus _ACUUCGAGCCUCUCGUGCUGGCUCUUAAUUGUUUUGCCGCUUUGUUCUGGCCAACUGGCAAUACAAAUAAAGCCAGGAAACUGCAAAUGAAUGGGUUCGAAGCAGCGAUGCC_ ..((((((((((.((((....(((.(((.((((.((((((.((.((....)).)).)))))).)))).))))))(((....)))...))))..))))))))))........... (-20.57 = -24.13 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:24 2011