| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,486,468 – 17,486,568 |
| Length | 100 |
| Max. P | 0.676791 |
| Location | 17,486,468 – 17,486,568 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.79 |
| Shannon entropy | 0.26631 |
| G+C content | 0.36337 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -14.62 |
| Energy contribution | -14.97 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17486468 100 + 22422827 UUGCGCAAUCUUGAACAUGGAGAAAACUAUAUCUGAUUUGAACAAAAGGAUCUUUUGUGCCAAACAUUUACGUUACUUGGAGGAUAAUAUGUAAUAUUGU ..((((((((((.......))))...........(((((........)))))..))))))...(((.((((((...............))))))...))) ( -11.76, z-score = 1.42, R) >droSim1.chrX 3576168 87 - 17042790 UUGCGCAAUCUUGAACAUGGAGAAAACUAUAUCUGAUCUGAACAAAGAUCAGAUUUGUGCCAAAGACUUACGUUGCCUCUUGG-UGAU------------ ..((((((((((.......)))).......(((((((((......)))))))))))))))...........((..((....))-..))------------ ( -23.90, z-score = -2.99, R) >droSec1.super_17 1330043 87 + 1527944 UUGCGCAAUCUUGAACAUGGAGAAAACUAUAUCUGAUCUGAACAAAGAUCAGAUUUGUGCCAAAGACUUACGUUACCUCUUGG-UGAU------------ ..((((((((((.......)))).......(((((((((......)))))))))))))))...........((((((....))-))))------------ ( -24.50, z-score = -3.63, R) >consensus UUGCGCAAUCUUGAACAUGGAGAAAACUAUAUCUGAUCUGAACAAAGAUCAGAUUUGUGCCAAAGACUUACGUUACCUCUUGG_UGAU____________ ..((((((((((.......)))).......(((((((((......)))))))))))))))...........((((((....)).))))............ (-14.62 = -14.97 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:23 2011