| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,702,700 – 11,702,758 |
| Length | 58 |
| Max. P | 0.992174 |
| Location | 11,702,700 – 11,702,758 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Shannon entropy | 0.29214 |
| G+C content | 0.35844 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -11.55 |
| Energy contribution | -11.33 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.992174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11702700 58 - 23011544 GAAUUUCAAAAGCGGAAUUUUAUUGUGAAUUUAGUUCGCAGUAAAUUCAAGACAGAGG ..............((((((.(((((((((...))))))))))))))).......... ( -11.90, z-score = -2.43, R) >droYak2.chr2L 8126933 58 - 22324452 GAAUUUCAAUUGCGCCAUUUUGUUGUGAAUUCAGUUCGCAGUAAGAUGAAGAUGAAGG ...(((((....(..(((((((((((((((...)))))))))))))))..).))))). ( -13.80, z-score = -1.65, R) >droEre2.scaffold_4929 12933558 57 + 26641161 GAAUUUCGAUUGCG-GAAUUUGUUGUGAAUUUAGUUCGCAGUAAAUUCGCAAUGAAGG ...((((.((((((-.((((((((((((((...)))))))))))))))))))))))). ( -19.90, z-score = -4.36, R) >consensus GAAUUUCAAUUGCG_AAUUUUGUUGUGAAUUUAGUUCGCAGUAAAUUCAAGAUGAAGG ...............(((((((((((((((...))))))))))))))).......... (-11.55 = -11.33 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:23 2011