| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,477,050 – 17,477,211 |
| Length | 161 |
| Max. P | 0.523191 |
| Location | 17,477,050 – 17,477,211 |
|---|---|
| Length | 161 |
| Sequences | 4 |
| Columns | 162 |
| Reading direction | forward |
| Mean pairwise identity | 91.21 |
| Shannon entropy | 0.14261 |
| G+C content | 0.38709 |
| Mean single sequence MFE | -37.18 |
| Consensus MFE | -30.83 |
| Energy contribution | -31.82 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.02 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17477050 161 + 22422827 GCCGACAUAUAAUGGAUGAUUUCCAUGCAACAAAACAUAUCUCACAUC-GGGGGGGAAAUAAAACGAGAAAUAAUAUAAACAACUUAUGCAUUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGA ..((((......(((((((((((((((........))).((((.....-.))))))))))..............(((((.....)))))))))))..((.((((....))))))......))))...(((((((((((((......)))))))))))))... ( -38.20, z-score = -1.52, R) >droEre2.scaffold_4690 7815188 157 + 18748788 GCCGACAUAUAAUGGAUCUUUUCCACGCAACAAAACAUAUCUCACA---UCGGUGGAAA--AAACGAGAAAUAAUAUAAACAACUUAUACAUUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGA ..((((......(((((.((((((((....................---...)))))))--)............(((((.....))))).)))))..((.((((....))))))......))))...(((((((((((((......)))))))))))))... ( -35.10, z-score = -1.64, R) >droYak2.chrX 16105149 159 + 21770863 GCCGACAUAUAAUGGAUGAUUUCCAUGCAACAAAACAUAUCUCACACA-UCGGUGGAAA--AAACGAGAAAUAAUAUAAACAACUUAUACAUUCAACGCAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGA .((..(((...(((((.....)))))((((.........((((.(((.-...)))(...--...))))).....(((((.....)))))...........))))..)))(((((.....)))))...(((((((((((((......))))))))))))))). ( -36.40, z-score = -1.69, R) >droSec1.super_17 1320751 161 + 1527944 GCCACCAUAUAAUGGAUGAUUUCCAUGCAACAAAACAUAUCUCACAUCGGCGGGGGAAAAAAAAAAACGAGAAAUA-AUAUAACUUAUGCAUUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGG .(((((((....((((((.(((((.(((.....................)))..)))))..............(((-(......)))).))))))..((.((((....))))))...))))).....(((((((((((((......))))))))))))))). ( -39.00, z-score = -1.51, R) >consensus GCCGACAUAUAAUGGAUGAUUUCCAUGCAACAAAACAUAUCUCACAUC_GCGGGGGAAA__AAACGAGAAAUAAUAUAAACAACUUAUACAUUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGA .((..(((...(((((.....)))))((((.........((((.(......).)))).................(((((.....)))))...........))))..)))(((((.....)))))...(((((((((((((......))))))))))))))). (-30.83 = -31.82 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:20 2011