| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,474,496 – 17,474,663 |
| Length | 167 |
| Max. P | 0.620271 |
| Location | 17,474,496 – 17,474,663 |
|---|---|
| Length | 167 |
| Sequences | 5 |
| Columns | 167 |
| Reading direction | reverse |
| Mean pairwise identity | 94.91 |
| Shannon entropy | 0.09184 |
| G+C content | 0.42078 |
| Mean single sequence MFE | -47.60 |
| Consensus MFE | -42.54 |
| Energy contribution | -43.90 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17474496 167 - 22422827 UUGGGCACUUUAAAAUGGCAAUUAGCUUGGCCAUUUGAAACGGGAAAUGUUUUGCAAAACGAACGGUUAAUGCAGGUGCAAUUUACAGGGGGUAAUCGCCUAAUUACCGUUAGUCGUGCCUCACUGUAUCUUCGUUUGUUUUGGGCUUCUAAUUGGCAAUUGGCAAC ....((......((.((.(((((((...((((....((((((.....)))))).((((((((((((....(((....)))...(((((((((((..((.(((((....))))).)))))))).)))))...)))))))))))))))).))))))).)).)).))... ( -52.30, z-score = -2.49, R) >droSim1.chrX_random 4482722 167 - 5698898 UCGGGCACUUCAAAAUGGCAAUUAGCUUGGCCAUUUGAAACGGGAAAUGUUUUGUAAAACGAACGGUUAAUGCAGGUGCAAUUUACAGGGGGUAAUCGCCUAAUUACCGUUAGUCGUGCCUCACUGUAUCUUCGUUUGUUUUGGGCUUCUAAUUGGCAAUUGGCAAC ....((......((.((.(((((((...((((....((((((.....)))))).((((((((((((....(((....)))...(((((((((((..((.(((((....))))).)))))))).)))))...)))))))))))))))).))))))).)).)).))... ( -50.20, z-score = -2.06, R) >droSec1.super_17 1318250 167 - 1527944 UUGGGCACUUAAAAAUGGCAAUUAGCUUGGCCAUUUGAAACGGGAAAUGUUUUGUAAAACGAACGGUUAAUGCAGGUGAAAUUUACAGGGGGUAAUCGCCUAAUUACCGUUAGUCGUGCCUCACUAUAUCUUCGUUUGUUUUGGGCUUCUAAUUGGCAAUUGGCAAC ....((......((.((.(((((((...((((....((((((.....)))))).((((((((((((...(((.((((((...))))..((((((..((.(((((....))))).)))))))).)).)))..)))))))))))))))).))))))).)).)).))... ( -43.10, z-score = -0.74, R) >droYak2.chrX 16102631 160 - 21770863 UUGCGCACUUCA-------AAUUAGCUUGGCCAUUUGAAACGGGAAAUGUUUUGUAAAACGAACGGUUAGUGCAGGUGCAAUUUACAGAGGGUAAUCGCCUAAUUACCGUUAGUCGUGCCUCACUGUAUUUUCGUUUGUUUUGGGCUUCUAAUUGGCAAUUGGCAAC ((((.((.(((.-------((((((...((((....((((((.....)))))).((((((((((((.(((((.(((..(.....((.((.((((((......)))))).)).)).)..)))))))).....)))))))))))))))).)))))).).)).)))))). ( -47.30, z-score = -1.84, R) >droEre2.scaffold_4690 7812643 166 - 18748788 AUGGGCACUUCAAAAUGGCAAUUAGCUUGGCCAUUUGAAACGGGAAAUGUUUUGUAAAACGAACGGUUAAUGCAGGUGCAAUUUACAGGGGG-AAUCGCCCAAUUACCGUUAGUCGUGCCUCACUGUAUUUUCGUUUGUUUUUGGCUUCUAAUUGGCAAUUGGCAAC ....((......((.((.(((((((...(((((...((((((.....))))))..(((((((((((..((((((((.(((..(((..(((((-.....))).....))..)))...)))..).))))))).)))))))))))))))).))))))).)).)).))... ( -45.10, z-score = -0.53, R) >consensus UUGGGCACUUCAAAAUGGCAAUUAGCUUGGCCAUUUGAAACGGGAAAUGUUUUGUAAAACGAACGGUUAAUGCAGGUGCAAUUUACAGGGGGUAAUCGCCUAAUUACCGUUAGUCGUGCCUCACUGUAUCUUCGUUUGUUUUGGGCUUCUAAUUGGCAAUUGGCAAC ....((......((.((.(((((((...((((....((((((.....)))))).((((((((((((...(((((((.(((....((..(.((((((......)))))).)..))..)))..).))))))..)))))))))))))))).))))))).)).)).))... (-42.54 = -43.90 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:18 2011