| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,469,627 – 17,469,720 |
| Length | 93 |
| Max. P | 0.670980 |
| Location | 17,469,627 – 17,469,720 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 73.00 |
| Shannon entropy | 0.51463 |
| G+C content | 0.51414 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -13.59 |
| Energy contribution | -13.35 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17469627 93 - 22422827 GUAACGGCAGUGGC-UUCAUCAUUCCCCUGGGAAGCAAUUCCUCAAUGUCGAAUUUACUGCUCAGUGACUCACCGACUUCCUCGCCGAGCAGCU .....((((((((.-(((..((((.....(((((....))))).))))..))).)))))))).(((..(((..(((.....)))..)))..))) ( -25.30, z-score = -1.21, R) >droSim1.chrX_random 4477444 93 - 5698898 GUAACGGCAGUGGU-UUCAUCAUUCCCCUAGGAAGCAAUUCCUCAAUGUCCAAUUUACUGCUUAGUGGCUCACCGACUUCUUCGCCGAGCAACU .....((((((((.-.....((((.....(((((....))))).))))......)))))))).(((.((((..(((.....)))..)))).))) ( -24.40, z-score = -2.21, R) >droSec1.super_17 1313245 93 - 1527944 GUAACGGCAGUGGU-UUCAUCAUUCCCCUGGGAAGCAAUUCCUCAAUGUCCAAUUUACUGCUCAGUGGCUCACCGACUUCCUCGCCGAACAGCU ....((((((..((-..............(((((....))))).............))..)).(((((....)).))).....))))....... ( -18.93, z-score = 0.48, R) >droEre2.scaffold_4690 7807718 93 - 18748788 GCAGCGGCAGUGGU-UUCAUCAUUCCCCUGGGAAGCAAUCCCUCAAUGUCCAAUUUACUGCUCAGCAGCUCACCGACUUCCUCGUCGGGCAGCA ((...((((((((.-.....((((.....((((.....))))..))))......))))))))..)).(((..(((((......)))))..))). ( -30.20, z-score = -2.18, R) >droWil1.scaffold_181096 1808883 89 + 12416693 -UAGUGGUAGUGGCAAUUCUGGGAACGCCGGUUCGCCUCUCUCCUCCAUUUGCUCU-UUGCUAGCUAAUUUUUCAAAUCAAUCGUCCACUG--- -((((((.((.(((....((((.....))))...))).))...........((...-..))........................))))))--- ( -16.80, z-score = -0.15, R) >droYak2.chrX 16097565 93 - 21770863 GCAGCGGAAGUGGU-UUCAUCAUUCCCCUGGGAAGCAAUCCCUCAAUGUCCAAUCUACUGCUCAGCAGUUCACCGACUUCUUCGCCGAGCAGUA .....(((..(((.-.......((((....))))........)))...)))....((((((((.((((((....)))).....)).)))))))) ( -24.19, z-score = -1.06, R) >consensus GUAACGGCAGUGGU_UUCAUCAUUCCCCUGGGAAGCAAUUCCUCAAUGUCCAAUUUACUGCUCAGUAGCUCACCGACUUCCUCGCCGAGCAGCU .....((((((((.......((((.....((((.....))))..))))......))))))))..((.((((..(((.....)))..)))).)). (-13.59 = -13.35 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:17 2011