Locus 15112

Sequence ID	dm3.chrX
Location	17,451,132 – 17,451,251
Length	119
Max. P	0.882738

overview

Window 5

Location	17,451,132 – 17,451,251
Length	119
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	52.37
Shannon entropy	0.68714
G+C content	0.46278
Mean single sequence MFE	-32.03
Consensus MFE	-13.62
Energy contribution	-12.97
Covariance contribution	-0.66
Combinations/Pair	1.40
Mean z-score	-1.26
Structure conservation index	0.43
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.06
SVM RNA-class probability	0.882738
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17451132 119 + 22422827
ACUUAGGACCACCCUAAUUCCUUAGGGUCACCCUAGUAGAUCUUUAGAUACACCCUAAUACUAAAUAUGCGAAUUCAGCAUGUACGCCUUUAGGGGUCGCACUCGACUCCCAUUGGUUA-
...((((...(((((((....)))))))...))))((..(((....)))..))...........((((((.......))))))..(((..(.(((((((....))))))).)..)))..- ( -32.50, z-score =  -2.19, R)
>droEre2.scaffold_4784 2474290 120 - 25762168
AAUUAAGUCGAUAUAAGUCCGGGGUUGUUACCCUAACAUUACACUAAUGUUACCCUAACAUUUUAUAUGCAGAUUCAGCAUAAGCGCCUCUAGGGGCCGUGCCUGGUUCUGAUAGGUCUC
...............((.(((((((....)))))(((((((...)))))))..............(((.((((..((((((..((.((....)).)).))).)))..))))))))).)). ( -29.00, z-score =  -0.17, R)
>droAna3.scaffold_8109 3707 104 + 5944
-------------CAAACAGUCGGUAGAAAUCUUGGGUGAUUCUUGGAU-CACCCUAGUCUUUAUAAUGUCGACUCAGCAUACCCGCCUUUGGGGGCCGUGCCUGGAUCCCACUGGUU--
-------------.....(((((..(.(((.((.((((((((....)))-))))).))..)))....)..)))))..........(((..((((..(((....)))..))))..))).-- ( -34.60, z-score =  -1.42, R)
>consensus
A_UUA_G_C_A__CAAAUACCCGGUAGUAACCCUAGCAGAUCAUUAGAU_CACCCUAAUAUUUAAUAUGCAGAUUCAGCAUAAACGCCUUUAGGGGCCGUGCCUGGAUCCCAUUGGUU__
.................................................................(((((.......)))))...(((....(((((((....)))))))....)))... (-13.62 = -12.97 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:14 2011