| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,693,757 – 11,693,855 |
| Length | 98 |
| Max. P | 0.994498 |
| Location | 11,693,757 – 11,693,855 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.61 |
| Shannon entropy | 0.24903 |
| G+C content | 0.40948 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -20.49 |
| Energy contribution | -20.23 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.15 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.71 |
| SVM RNA-class probability | 0.994498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11693757 98 - 23011544 CCUGAUGGUGUGACUUUCCCCAGCUUCGCUGUUUUGUAUACUUAUAUAAUAGUAGAUAAUAGAAUAGCUAUUCUUCAGGGGCAAUACAUAUUUCGGAA .((((..(((((..((.((((((..(.((((((((((.((((........))))....)))))))))).)..))...)))).)))))))...)))).. ( -24.80, z-score = -1.63, R) >droYak2.chr2L 8117753 85 - 22324452 GCUGAUGGAGUAACUUUCCCCUGCUUCGCUGUUUGGUAGACC-------------AUAAUAUAAUAGCGAUUCCUAAGGGGAAAUACUCUUUUCGGAA .((((.((((((..((((((((...(((((((((((....))-------------)......))))))))......))))))))))))))..)))).. ( -33.40, z-score = -5.09, R) >droSec1.super_3 7086015 85 - 7220098 CCUGAUGGUGUAACUUUCCCCAGCAUCGCUGUUUUGUACACC-------------AUAAUAGAAUAGCUAUUCUUCAGGGGCAAUACACAUUUCGGAA .((((..(((((..((.((((((.((.((((((((((.....-------------...)))))))))).)).))...)))).)))))))...)))).. ( -25.10, z-score = -2.93, R) >droSim1.chr2L 11503250 85 - 22036055 CCUGAUGGUGUAACUUUCCCCAGCAUCGCUGUUUUGUACACC-------------AUAAUAGAAUAGCUAUUCUUCAGGGGCAAUACACAUUUCGGAA .((((..(((((..((.((((((.((.((((((((((.....-------------...)))))))))).)).))...)))).)))))))...)))).. ( -25.10, z-score = -2.93, R) >consensus CCUGAUGGUGUAACUUUCCCCAGCAUCGCUGUUUUGUACACC_____________AUAAUAGAAUAGCUAUUCUUCAGGGGCAAUACACAUUUCGGAA .((((..(((((..((.((((......((((((((((.....................)))))))))).........)))).)))))))...)))).. (-20.49 = -20.23 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:22 2011