Locus 15109

Sequence ID dm3.chrX
Location 17,438,441 – 17,438,552
Length 111
Max. P 0.991449
window20820 window20821

overview

Window 0

Location 17,438,441 – 17,438,541
Length 100
Sequences 7
Columns 110
Reading direction forward
Mean pairwise identity 73.80
Shannon entropy 0.50451
G+C content 0.49272
Mean single sequence MFE -31.10
Consensus MFE -20.87
Energy contribution -21.80
Covariance contribution 0.93
Combinations/Pair 1.42
Mean z-score -1.97
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.48
SVM RNA-class probability 0.991449
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17438441 100 + 22422827
UUGCAAUUGCAGCUGAAGUCA-----UCGCAGCGGCAUUAA--CAAUUAAUGUGCCACAGCU-ACUGCUGCUCCACUUGGCUUCACUUCGCUGCACUUCAAUCUCGGA--
(((.((.((((((((((((((-----..(.((((((((...--........)))))..(((.-...)))))).)...))))))))....)))))).))))).......-- ( -31.50, z-score =  -2.20, R)
>droEre2.scaffold_4690 7777422 100 + 18748788
UUGCAAUUGCAGCUGAAGUCA-----UCGCAGCGGCAUUAA--CAAUUAAUGUGCCACAGCU-ACUGCUGCUCCACUUGGCUUCACUUCGCUGCAAUCCAAUCUCGGA--
......(((((((((((((((-----..(.((((((((...--........)))))..(((.-...)))))).)...))))))))....)))))))(((......)))-- ( -33.50, z-score =  -2.83, R)
>droYak2.chrX 16067204 100 + 21770863
UUGCAGUUGCAGCUGAAGUCA-----UCGCAGCGGCAUUAA--CAAUUAAUGUGCCACAGCU-ACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGA--
(((.(((.(((((((((((((-----..(.((((((((...--........)))))..(((.-...)))))).)...))))))))....)))))))).))).......-- ( -33.10, z-score =  -2.11, R)
>droSec1.super_17 1284013 100 + 1527944
UUGCAAUUGCAGCUGAAGUCA-----UCGCAGCGGCAUUAA--CAAUUAAUGUGCCACAGCU-ACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGA--
(((.((.((((((((((((((-----..(.((((((((...--........)))))..(((.-...)))))).)...))))))))....)))))).))))).......-- ( -31.50, z-score =  -2.18, R)
>droSim1.chrX_random 4461056 100 + 5698898
UUGCAAUUGCAGCUGAAGUCA-----UCGCAGCGGCAUUAA--CAAUUAAUGUGCCACAGCU-ACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGA--
(((.((.((((((((((((((-----..(.((((((((...--........)))))..(((.-...)))))).)...))))))))....)))))).))))).......-- ( -31.50, z-score =  -2.18, R)
>droPer1.super_15 1348325 95 + 2181545
------CCGAAGUUGAAGUCA-----UUGCUGUGGCAUUAA--CAAUUAAUGUGCCACAGC--GCUACUGCGCUGCUCCACUUUGGCAUGCCAUGCCACGCCACCCAAUC
------..(((((.(((((..-----..((((((((((...--........))))))))))--((....)))))..)).)))))(((((...)))))............. ( -29.60, z-score =  -1.69, R)
>droGri2.scaffold_15110 2573597 104 - 24565398
CUGCAGCUGCAACUGAAAUUCGUGACUUGAAGCGACAUUAAGCUAGGGGAUUUAGUAUGGCCAAAGGCAUUUCCAAAUGCCUUUGCUUUA----AUUGCACCCUCAAA--
.(((((((...((((((.(((.((.(((((.......))))).)).))).))))))..)))((((((((((....)))))))))).....----..))))........-- ( -27.00, z-score =  -0.60, R)
>consensus
UUGCAAUUGCAGCUGAAGUCA_____UCGCAGCGGCAUUAA__CAAUUAAUGUGCCACAGCU_ACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGA__
.......((((((((((((((.......((((((((((.............)))))..((....)))))))......))))))))....))))))............... (-20.87 = -21.80 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 17,438,459 – 17,438,552
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 83.58
Shannon entropy 0.32219
G+C content 0.52384
Mean single sequence MFE -26.54
Consensus MFE -19.19
Energy contribution -19.78
Covariance contribution 0.58
Combinations/Pair 1.15
Mean z-score -2.26
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.72
SVM RNA-class probability 0.963618
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17438459 93 + 22422827
UCAUCGCAGCGGCAUUAACAAUUAAUGUGCCACAGCUACUGCUGCUCCACUUGGCUUCACUUCGCUGCACUUCAAUCUCGGACAGCUUUCGGC
.....((((((((((((.....))))))((((((((....)))).......)))).......)))))).........(((((.....))))). ( -25.71, z-score =  -2.08, R)
>droEre2.scaffold_4690 7777440 93 + 18748788
UCAUCGCAGCGGCAUUAACAAUUAAUGUGCCACAGCUACUGCUGCUCCACUUGGCUUCACUUCGCUGCAAUCCAAUCUCGGACAGCUUUCGGC
.....((((((((((((.....))))))((((((((....)))).......)))).......))))))..(((......)))........... ( -26.41, z-score =  -2.16, R)
>droYak2.chrX 16067222 93 + 21770863
UCAUCGCAGCGGCAUUAACAAUUAAUGUGCCACAGCUACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGACAGCUUUCGGC
.....((((((((((((.....))))))((((((((....)))).......)))).......)))))).........(((((.....))))). ( -25.91, z-score =  -2.02, R)
>droSec1.super_17 1284031 93 + 1527944
UCAUCGCAGCGGCAUUAACAAUUAAUGUGCCACAGCUACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGACAGCAUUCGGC
.....((((((((((((.....))))))((((((((....)))).......)))).......)))))).........(((((.....))))). ( -25.81, z-score =  -1.93, R)
>droSim1.chrX_random 4461074 93 + 5698898
UCAUCGCAGCGGCAUUAACAAUUAAUGUGCCACAGCUACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGACAGCUUUCGGC
.....((((((((((((.....))))))((((((((....)))).......)))).......)))))).........(((((.....))))). ( -25.91, z-score =  -2.02, R)
>droPer1.super_15 1348337 83 + 2181545
UCAUUGCUGUGGCAUUAACAAUUAAUGUGCCACAGC-GCUACUGCGCUGCUCCACUUUGGCAUGCCAUGCCACGCCACCCAAUC---------
..((((..(((((.............(((...((((-((....))))))...)))..((((((...)))))).))))).)))).--------- ( -29.50, z-score =  -3.32, R)
>consensus
UCAUCGCAGCGGCAUUAACAAUUAAUGUGCCACAGCUACUGCUGCUCCACUUGGCUUCACUCCGCUGCACUUCAAUCUCGGACAGCUUUCGGC
.....((((((((((((.....))))))((((((((....)))).......)))).......))))))......................... (-19.19 = -19.78 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:11 2011