Locus 15104

Sequence ID dm3.chrX
Location 17,401,095 – 17,401,207
Length 112
Max. P 0.549701
window20812

overview

Window 2

Location 17,401,095 – 17,401,207
Length 112
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 97.78
Shannon entropy 0.03590
G+C content 0.57907
Mean single sequence MFE -45.60
Consensus MFE -43.60
Energy contribution -43.23
Covariance contribution -0.37
Combinations/Pair 1.05
Mean z-score -1.12
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.11
SVM RNA-class probability 0.549701
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17401095 112 - 22422827
GCCUCUGCGAGCGCGCAUCUCUGGCGAGAGAGCGCGAAAGAGAGCCGUGCGGCGUGAG-ACCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCG
(((..((((....)))).....))).(((((((((((((.(((((((.(((((....)-.)))))))).))).)))))))))))))...((((.(((.......))).)))). ( -48.30, z-score =  -1.53, R)
>droEre2.scaffold_4690 7740556 113 - 18748788
GCCGCUGCGAGCGCGCAUCUCUGGCGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAGAACUGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCG
((((.((((....))))....)))).((((((((..(((.(((((((.(((((....)..)))))))).))).)))..))))))))...((((.(((.......))).)))). ( -41.90, z-score =   0.11, R)
>droSec1.super_17 1246969 112 - 1527944
GCCUCUGCGAGCGCGCAUCUCUGGCGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAG-ACCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCG
(((..((((....)))).....))).((((((((..(((.(((((((.(((((....)-.)))))))).))).)))..))))))))...((((.(((.......))).)))). ( -46.10, z-score =  -1.39, R)
>droSim1.chrX 3527345 112 + 17042790
GCCUCUGCGAGAGCGCAUCUCUGGCGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAG-ACCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCG
(((..((((....)))).....))).((((((((..(((.(((((((.(((((....)-.)))))))).))).)))..))))))))...((((.(((.......))).)))). ( -46.10, z-score =  -1.69, R)
>consensus
GCCUCUGCGAGCGCGCAUCUCUGGCGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAG_ACCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCG
(((..((((....)))).....))).(((((((((((((.(((((((.(((((....)..)))))))).))).)))))))))))))...((((.(((.......))).)))). (-43.60 = -43.23 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:03 2011