| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,398,122 – 17,398,242 |
| Length | 120 |
| Max. P | 0.822961 |
| Location | 17,398,122 – 17,398,242 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.13 |
| Shannon entropy | 0.24299 |
| G+C content | 0.44090 |
| Mean single sequence MFE | -35.54 |
| Consensus MFE | -28.96 |
| Energy contribution | -28.84 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.822961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17398122 120 + 22422827 CCAGUUUUCAGGUGCCGGCGAGAUGCCUCUCUUUUUUGUGAUUUACGUACCUGGUAUUUGUGGAACACAUGGGUAUAUCGGAUUCGCGAUAAUAAGAUCGCAUUUACGCAACCUGGCUAA .......((((((....(((((((((.(((..((.((((((....((......(((((..((.....))..)))))..))...)))))).))..)))..)))))).))).)))))).... ( -35.10, z-score = -1.49, R) >droSim1.chrX 3524353 120 - 17042790 ACAGUUUUCAGGUGCCGGCGAGAUGCCUCGCUUUUUUGUGAUUUACGUGCCUGGUAUUUGUGGAAUACACGGGUAUAUCGGAUUCGCGAUAAUAAGAUCGCAUUUACGCAACCUGACUAA .......((((((((.((((((....))))))....((((((((..(((((((((((((...)))))).)))))))((((......))))....)))))))).....)).)))))).... ( -40.90, z-score = -3.08, R) >droSec1.super_17 1243937 120 + 1527944 ACAGUUUUCAGGUGCCGGCGAGAUGCCUCCCUUUUUUGUGAUUUACGUGCCUGGUAUUUGUGGAAUACAUGGGUAUAUCGGAUUCGCGAUAAUAAGAUCGCAUUUCCGCAACCUGGCUAA .......((((((....(((((((((....(((..((((((.((..(((((((((((((...)))))).)))))))....)).))))))....)))...)))))).))).)))))).... ( -34.50, z-score = -0.78, R) >droYak2.chrX 16026321 117 + 21770863 CUAUUUUUCAGGUGC---CGAGAUGCCUCGUUUUUUUGUGAUUUAUGUACCUGGCAUUCGUGGAGUGAAUGGGUAUAUAGGAUUCGCGAUGACCAGAUCGCAUUUACGCAACCUGGCAAA .......((((((((---..((((((((.(((...(((((((((((((((((..(((((...)))))...)))))))))))..)))))).))).))...))))))..)).)))))).... ( -36.90, z-score = -2.19, R) >droEre2.scaffold_4690 7737394 117 + 18748788 CUAUUUUUCAGGUGC---CGAGAUGCCUCGCUUUUUUGUGAUUUAUGUACCUGGUAUUUGUGUAUUGAAUAGGUAUACAGGGUUUGCGAACAUUAGAUCGCAUCUACGCAAACAGGCUAA .......((((((((---....(((..((((......))))..)))))))))))..((((((((((.....))))))))))(((((((.....(((((...))))))))))))....... ( -30.30, z-score = -1.12, R) >consensus CCAGUUUUCAGGUGCCGGCGAGAUGCCUCGCUUUUUUGUGAUUUACGUACCUGGUAUUUGUGGAAUACAUGGGUAUAUCGGAUUCGCGAUAAUAAGAUCGCAUUUACGCAACCUGGCUAA .......((((((....(((((((((.((......((((((.((..((((((((((((.....))))).)))))))....)).))))))......))..)))))).))).)))))).... (-28.96 = -28.84 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:53:02 2011