| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,392,314 – 17,392,384 |
| Length | 70 |
| Max. P | 0.592943 |
| Location | 17,392,314 – 17,392,384 |
|---|---|
| Length | 70 |
| Sequences | 4 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 95.95 |
| Shannon entropy | 0.06779 |
| G+C content | 0.40502 |
| Mean single sequence MFE | -15.25 |
| Consensus MFE | -13.93 |
| Energy contribution | -14.30 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.592943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17392314 70 - 22422827 GAGCGAAUCUCCGCUUUCCGCUUGUAAAAUAUUUCCGAAAAUUGUGAAUAUUCCGUUGUCUUUGCAAGGC (((((......)))))....(((((((((((((..(((...)))..))))).........)))))))).. ( -12.80, z-score = -0.76, R) >droSim1.chrX 3518707 69 + 17042790 GAGCGAAUCUCCGCUUUCCGCUUGUAAAAUAUUUGC-AAAAUUGUGAAUAUUCCGUUGUCUUUGCAAGGC (((((......)))))....(((((((((((((..(-(....))..))))).........)))))))).. ( -16.10, z-score = -1.91, R) >droSec1.super_17 1238352 70 - 1527944 GAGCGAAUCUCCGCUUUCCGCUUGUAAAAUAUUUGCAAAAAUUGUGAAUAUUCCGUUGUCUUUGCAAGGC (((((......)))))....(((((((((((((..((.....))..))))).........)))))))).. ( -16.10, z-score = -1.92, R) >droYak2.chrX 16020431 70 - 21770863 GAGCGAAUCUCCGCUUUUCGCUUGUAAAAUAUUUGCAAAAAUUGUGAAUACUGCGUUGUCUUUGCAAGGC (((((((.........)))))))......((((..((.....))..))))..((.((((....)))).)) ( -16.00, z-score = -1.14, R) >consensus GAGCGAAUCUCCGCUUUCCGCUUGUAAAAUAUUUGCAAAAAUUGUGAAUAUUCCGUUGUCUUUGCAAGGC (((((......)))))....(((((((((((((..((.....))..))))).........)))))))).. (-13.93 = -14.30 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:59 2011