| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,391,745 – 17,391,842 |
| Length | 97 |
| Max. P | 0.695236 |
| Location | 17,391,745 – 17,391,842 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 95.45 |
| Shannon entropy | 0.07670 |
| G+C content | 0.56039 |
| Mean single sequence MFE | -40.00 |
| Consensus MFE | -32.16 |
| Energy contribution | -32.00 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17391745 97 - 22422827 UGUGUGUCAAAGCGGGAAUUUUCCCGGGAAUCCGAGGUGGCUUGCUGCCUGCUU---CGGUGGCCAACAAGUGCCGAGUGCGUCUUUUGUGUGACAUGCA .((((((((...(((((....)))))((...((((((((((.....))).))))---)))...)).(((((.(.((....)).).))))).)))))))). ( -38.90, z-score = -2.09, R) >droEre2.scaffold_4690 7731079 95 - 18748788 UGUGUGUCAAAGCGGGAAUUUUCCCGGGAAUCCGAGGUGGCUUGCUGACUGCUU---CGGUGGCCAACAAGUGCCGAGUGCGUCUUUU--GUGACAUGCA .(((((((....(((((....)))))((...((((((..((.....).)..)))---)))...)).(((((.(.((....)).).)))--))))))))). ( -35.20, z-score = -1.36, R) >droYak2.chrX 16019822 95 - 21770863 UGUGUGUCAAAGCGGGAAUUUUCCCGGGAAUCCGAGGUGGCUUGUUGGCCGCUU---CGGUGGCCAACAAGUGCCGAGUGCGUCUUUU--GUGACAUGCA .((((((((...(((((....)))))((((..((.((((.((((((((((((..---..)))))))))))))))).....))..))))--.)))))))). ( -48.50, z-score = -5.17, R) >droSec1.super_17 1237758 100 - 1527944 UGUGUGUCAAAGCGGGAAUUUUCCCGGGAAUCCGAGGUGGCUUGCUGCCUGCUUCGGCGGUGGCCAACAAGUGCCGAGUGCGUCUUUUGUGUGACAUGCA .((((((((...(((((....)))))(((.....(((..(....)..)))(((((((((.((.....))..))))))).)).)))......)))))))). ( -38.70, z-score = -1.19, R) >droSim1.chrX 3518113 100 + 17042790 UGUGUGUCAAAGCGGGAAUUUUCCCGGGAAUCCGAGGUGGCUUGCUGCCUGCUUCGGCGGUGGCCAACAAGUGCCGAGUGCGUCUUUUGUGUGACAUGCA .((((((((...(((((....)))))(((.....(((..(....)..)))(((((((((.((.....))..))))))).)).)))......)))))))). ( -38.70, z-score = -1.19, R) >consensus UGUGUGUCAAAGCGGGAAUUUUCCCGGGAAUCCGAGGUGGCUUGCUGCCUGCUU___CGGUGGCCAACAAGUGCCGAGUGCGUCUUUUGUGUGACAUGCA .((((((((...(((((....)))))((((..((.((((.((((.((.(((((.....))))).)).)))))))).....))..))))...)))))))). (-32.16 = -32.00 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:58 2011