| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,391,194 – 17,391,287 |
| Length | 93 |
| Max. P | 0.956825 |
| Location | 17,391,194 – 17,391,287 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 73.79 |
| Shannon entropy | 0.48622 |
| G+C content | 0.54402 |
| Mean single sequence MFE | -31.51 |
| Consensus MFE | -17.24 |
| Energy contribution | -18.80 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17391194 93 + 22422827 AACGGGAACGGAAUGGUGGUGGUCAUAGGGAAUUGCCUGCAAAAUUGGCAGGAAAGCCAAU-------GGGCGUGGCACUUCAGACGAUUACCGUCCAGC ...(....)(((.(((((((.(((.....(((.(((((((...((((((......))))))-------..))).)))).))).))).))))))))))... ( -37.70, z-score = -3.79, R) >droSim1.chrX 3517563 100 - 17042790 AACGGGAACGGUAUGGUGGCGGUCAUAGGGAAUUGCCUGCGAAAUUGGCAGGAAAGCCAAUAGGCAGUGGGCGUGGCACUUCAGACGAUUACCGUCCAGC ....(((.(((((..((.(((.((((.........(((((.......)))))...(((....))).)))).))).))...((....)).))))))))... ( -33.10, z-score = -1.19, R) >droSec1.super_17 1237208 100 + 1527944 AACGGGAACGGUAUGGUGGUGGUCAUAGGGAAUUGCCUGCGAAAUUGGCAGGAAAGCCAAUAGGCAGUGGGCGUGGCACUUCAGACGAUUACCGUCCAGC ...(....)((.((((((((.(((..((((...((((..(...((((((......)))))).....)..))))...).)))..))).))))))))))... ( -36.50, z-score = -2.41, R) >droYak2.chrX 16019292 92 + 21770863 ---GGGAAUGGUAUGGUGGAAAUCGUAGGGAAUUGCCUGGAAAAUUGGCAGGAAAGCCAGUG-----UGGGCGUGGCACUUCAGACGAUUACCGUCCAGC ---.....(((.((((((...(((((...(((.((((......((((((......)))))).-----.......)))).)))..)))))))))))))).. ( -31.54, z-score = -2.28, R) >droEre2.scaffold_4690 7730539 90 + 18748788 ---AGAAAUGGAAUGGUGAACAUCGUAGGGAAUUGCCUGGGAAAUUGGCAGGAAAGCCAGC-------GGGCGUGGCACUUCAGACGAUUACCGUCCAGC ---.....((((.((((((...((((...(((.((((.......(((((......))))).-------......)))).)))..)))))))))))))).. ( -30.24, z-score = -2.02, R) >droPer1.super_15 1295162 89 + 2181545 AUUGGGAGAAGAAAAGCGGAAGGAGCGGCAGCCAGAAUGUGGUGUCGGGCGGGAAGU-----------AGGCGUGUCAAUUGAGUCGAUUAGUGUCCGAC ...............((.(......).)).((((.....))))((((((((..((..-----------.(((...........)))..))..)))))))) ( -20.00, z-score = 0.01, R) >consensus AACGGGAACGGAAUGGUGGAGGUCAUAGGGAAUUGCCUGCGAAAUUGGCAGGAAAGCCAAU_______GGGCGUGGCACUUCAGACGAUUACCGUCCAGC .........((.(((((((..(((..((.....(((((.....((((((......)))))).......))))).....))...)))..)))))))))... (-17.24 = -18.80 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:57 2011